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Aliases for TRPC5OS Gene

Aliases for TRPC5OS Gene

  • TRPC5 Opposite Strand 2 3 5
  • TRPC5 Antisense RNA 1 (Non-Protein Coding) 2 3
  • TRPC5 Opposite Strand Protein 3 4
  • TRPC5-AS1 3 4
  • Putative Uncharacterized Protein TRPC5OS 3
  • TRPC5-Antisense RNA 1 4

External Ids for TRPC5OS Gene

Previous HGNC Symbols for TRPC5OS Gene

  • TRPC5-AS1

Previous GeneCards Identifiers for TRPC5OS Gene

  • GC0XP111128

Summaries for TRPC5OS Gene

GeneCards Summary for TRPC5OS Gene

TRPC5OS (TRPC5 Opposite Strand) is a Protein Coding gene.

Additional gene information for TRPC5OS Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRPC5OS Gene

Genomics for TRPC5OS Gene

GeneHancer (GH) Regulatory Elements for TRPC5OS Gene

Promoters and enhancers for TRPC5OS Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI111914 Enhancer 0.5 ENCODE 12.5 +38.7 38657 0.6 ZBTB21 SCRT2 FEZF1 TRIM28 TRPC5OS ENSG00000271421 TRPC5
GH0XI111869 Enhancer 0.6 ENCODE 0.4 -6.3 -6263 0.2 CTCF ZNF654 TRIM22 RAD21 SMC3 ZNF143 PRDM1 RUNX3 TRPC5OS GC0XM111788 TRPC5
GH0XI111870 Enhancer 0.4 Ensembl 0.4 -6.6 -6550 0.2 CTCF TRIM22 TRPC5OS GC0XM111788 TRPC5
GH0XI111861 Enhancer 0.3 ENCODE 0.4 -14.3 -14283 0.2 HNF4A TRPC5OS GC0XM111788 TRPC5
GH0XI111823 Enhancer 0.5 ENCODE 0.2 -52.8 -52763 0.2 CTCF ZNF654 GLIS1 ZNF143 RAD21 GC0XM111788 TRPC5OS TRPC5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TRPC5OS on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRPC5OS Gene

Genomic Locations for TRPC5OS Gene
chrX:111,876,051-111,903,990
(GRCh38/hg38)
Size:
27,940 bases
Orientation:
Plus strand
chrX:111,119,279-111,147,218
(GRCh37/hg19)

Genomic View for TRPC5OS Gene

Genes around TRPC5OS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRPC5OS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRPC5OS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRPC5OS Gene

Proteins for TRPC5OS Gene

  • Protein details for TRPC5OS Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NMA1-TR5OS_HUMAN
    Recommended name:
    Putative uncharacterized protein TRPC5OS
    Protein Accession:
    A6NMA1

    Protein attributes for TRPC5OS Gene

    Size:
    111 amino acids
    Molecular mass:
    12326 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TRPC5OS Gene

Post-translational modifications for TRPC5OS Gene

No Post-translational modifications

Other Protein References for TRPC5OS Gene

No data available for DME Specific Peptides for TRPC5OS Gene

Domains & Families for TRPC5OS Gene

Gene Families for TRPC5OS Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for TRPC5OS Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRPC5OS: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRPC5OS Gene

Function for TRPC5OS Gene

Animal Model Products

CRISPR Products

miRNA for TRPC5OS Gene

miRTarBase miRNAs that target TRPC5OS

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TRPC5OS Gene

Localization for TRPC5OS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRPC5OS Gene

Pathways & Interactions for TRPC5OS Gene

SuperPathways for TRPC5OS Gene

No Data Available

Interacting Proteins for TRPC5OS Gene

Gene Ontology (GO) - Biological Process for TRPC5OS Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRPC5OS Gene

Drugs & Compounds for TRPC5OS Gene

No Compound Related Data Available

Transcripts for TRPC5OS Gene

mRNA/cDNA for TRPC5OS Gene

(4) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TRPC5OS Gene

TRPC5 opposite strand:
Representative Sequences:

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRPC5OS Gene

No ASD Table

Relevant External Links for TRPC5OS Gene

GeneLoc Exon Structure for
TRPC5OS
ECgene alternative splicing isoforms for
TRPC5OS

Expression for TRPC5OS Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TRPC5OS Gene

mRNA differential expression in normal tissues according to GTEx for TRPC5OS Gene

This gene is overexpressed in Testis (x45.5).

NURSA nuclear receptor signaling pathways regulating expression of TRPC5OS Gene:

TRPC5OS

SOURCE GeneReport for Unigene cluster for TRPC5OS Gene:

Hs.247868
genes like me logo Genes that share expression patterns with TRPC5OS: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRPC5OS Gene

Orthologs for TRPC5OS Gene

This gene was present in the common ancestor of mammals.

Orthologs for TRPC5OS Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TRPC5OS 33
  • 100 (n)
dog
(Canis familiaris)
Mammalia TRPC5OS 33
  • 81 (n)
cow
(Bos Taurus)
Mammalia TRPC5OS 33
  • 74.77 (n)
rat
(Rattus norvegicus)
Mammalia LOC100909489 33
  • 74.53 (n)
mouse
(Mus musculus)
Mammalia Gm15070 33
  • 73.58 (n)
Trpc5os 16
Species where no ortholog for TRPC5OS was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TRPC5OS Gene

ENSEMBL:
Gene Tree for TRPC5OS (if available)
TreeFam:
Gene Tree for TRPC5OS (if available)

Paralogs for TRPC5OS Gene

No data available for Paralogs for TRPC5OS Gene

Variants for TRPC5OS Gene

Sequence variations from dbSNP and Humsavar for TRPC5OS Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1000094580 -- 111,884,205(+) C/T intron_variant
rs1000213364 -- 111,889,341(+) A/G intron_variant
rs1000263578 -- 111,876,682(+) A/T genic_upstream_transcript_variant, intron_variant
rs1000309725 -- 111,888,794(+) C/A intron_variant
rs1000331530 -- 111,888,443(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for TRPC5OS Gene

Variant ID Type Subtype PubMed ID
esv3559183 CNV deletion 23714750
esv3361732 OTHER inversion 20981092

Additional Variant Information for TRPC5OS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRPC5OS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TRPC5OS Gene

Disorders for TRPC5OS Gene

Additional Disease Information for TRPC5OS

No disorders were found for TRPC5OS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TRPC5OS Gene

Publications for TRPC5OS Gene

  1. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross MT … Bentley DR (Nature 2005) 3 4 58
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  5. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 58

Products for TRPC5OS Gene

Sources for TRPC5OS Gene

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