Aliases for TRP-TGG5-1 Gene

Aliases for TRP-TGG5-1 Gene

  • TRNA-Pro (Anticodon TGG) 5-1 2 3
  • Transfer RNA Proline 27 (Anticodon UGG) Pseudogene 2 3
  • Transfer RNA-Pro (TGG) 5-1 2 3
  • TRNA-Pro-TGG-5-1 3
  • TRNAP27P 3

External Ids for TRP-TGG5-1 Gene

Previous HGNC Symbols for TRP-TGG5-1 Gene

  • TRNAP27P

Summaries for TRP-TGG5-1 Gene

GeneCards Summary for TRP-TGG5-1 Gene

TRP-TGG5-1 (TRNA-Pro (Anticodon TGG) 5-1) is a Pseudogene.

Additional gene information for TRP-TGG5-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TRP-TGG5-1 Gene

Genomics for TRP-TGG5-1 Gene

GeneHancer (GH) Regulatory Elements for TRP-TGG5-1 Gene

Promoters and enhancers for TRP-TGG5-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J207001 Enhancer 1.3 Ensembl ENCODE dbSUPER 750.6 -1.4 -1401 10.2 CTCF RBPJ SMARCE1 POLR2A MIXL1 CC2D1A HLF L3MBTL2 ZNF652 ZC3H8 HG984003 TRP-TGG5-1 PIGR FCMR FCAMR IL24 IL20 PFKFB2 MAPKAPK2 IL19
GH01J207000 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.6 +3.9 3921 0.3 SREBF1 CBFA2T2 PKNOX1 TCF12 CBFA2T3 HG984003 TRP-TGG5-1 FCAMR
GH01J206966 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 0.3 +34.0 34027 7.9 USF2 ETV6 RELA HLF SP1 MAFK ZNF687 ZBTB33 IKZF1 RXRA FCAMR lnc-PIGR-4 PIGR FCMR IL20 IL24 IL10 MAPKAPK2 IL19 ENSG00000271680
GH01J206992 Enhancer 0.7 Ensembl ENCODE dbSUPER 0.4 +12.0 11968 1.3 HNF1A ZBTB33 TEAD3 FCAMR PIGR IL20 C1orf116 C4BPA ENSG00000271680 HG984003 TRP-TGG5-1
GH01J206982 Enhancer 0.6 Ensembl 0.3 +22.8 22784 0.2 CTCF RAD21 REST TRIM22 ZNF143 ZNF24 DEK RFX5 RB1 KLF16 FCAMR HG984003 TRP-TGG5-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRP-TGG5-1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRP-TGG5-1 Gene

Genomic Locations for TRP-TGG5-1 Gene
chr1:207,004,809-207,004,885
(GRCh38/hg38)
Size:
77 bases
Orientation:
Minus strand
chr1:207,178,154-207,178,230
(GRCh37/hg19)
Size:
77 bases
Orientation:
Minus strand

Genomic View for TRP-TGG5-1 Gene

Genes around TRP-TGG5-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRP-TGG5-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRP-TGG5-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRP-TGG5-1 Gene

Proteins for TRP-TGG5-1 Gene

Post-translational modifications for TRP-TGG5-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRP-TGG5-1 Gene

Domains & Families for TRP-TGG5-1 Gene

Gene Families for TRP-TGG5-1 Gene

genes like me logo Genes that share domains with TRP-TGG5-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRP-TGG5-1 Gene

Function for TRP-TGG5-1 Gene

Phenotypes From GWAS Catalog for TRP-TGG5-1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRP-TGG5-1 Gene

Localization for TRP-TGG5-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRP-TGG5-1 Gene

Pathways & Interactions for TRP-TGG5-1 Gene

PathCards logo

SuperPathways for TRP-TGG5-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRP-TGG5-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRP-TGG5-1 Gene

Drugs & Compounds for TRP-TGG5-1 Gene

No Compound Related Data Available

Transcripts for TRP-TGG5-1 Gene

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRP-TGG5-1 Gene

No ASD Table

Relevant External Links for TRP-TGG5-1 Gene

GeneLoc Exon Structure for
TRP-TGG5-1
ECgene alternative splicing isoforms for
TRP-TGG5-1

No data available for mRNA/cDNA for TRP-TGG5-1 Gene

Expression for TRP-TGG5-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRP-TGG5-1 Gene

Orthologs for TRP-TGG5-1 Gene

No data available for Orthologs and Evolution for TRP-TGG5-1 Gene

Paralogs for TRP-TGG5-1 Gene

No data available for Paralogs for TRP-TGG5-1 Gene

Variants for TRP-TGG5-1 Gene

Additional Variant Information for TRP-TGG5-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRP-TGG5-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRP-TGG5-1 Gene

Disorders for TRP-TGG5-1 Gene

No disorders were found for TRP-TGG5-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRP-TGG5-1 Gene

Publications for TRP-TGG5-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3 56

No data available for External Links for TRP-TGG5-1 Gene

Products for TRP-TGG5-1 Gene

Sources for TRP-TGG5-1 Gene