TRP-CGG2-1 Gene (RNA Gene)

TRNA-Pro (Anticodon CGG) 2-1

GC06P027091
GIFtS:
6
See more...

Aliases for TRP-CGG2-1 Gene

Subcategory (RNA class) for TRP-CGG2-1 Gene

tRNA

Number of RNA Genes sources:

3 / 17

Aliases for TRP-CGG2-1 Gene

  • TRNA-Pro (Anticodon CGG) 2-1 2 3
  • TRNA-Pro-CGG-2-1 2 3 162
  • Transfer RNA Proline 10 (Anticodon CGG) 2 3
  • Transfer RNA-Pro (CGG) 2-1 2 3
  • TRP-CGG2-1 2
  • TRNAP10 3
  • RF00005 168

External Ids for TRP-CGG2-1 Gene

Previous HGNC Symbols for TRP-CGG2-1 Gene

  • TRNAP10

Summaries for TRP-CGG2-1 Gene

GeneCards Summary for TRP-CGG2-1 Gene

TRP-CGG2-1 (TRNA-Pro (Anticodon CGG) 2-1) is an RNA Gene, and is affiliated with the tRNA class.

Rfam classification for TRP-CGG2-1 Gene

Additional gene information for TRP-CGG2-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TRP-CGG2-1 Gene

Genomics for TRP-CGG2-1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for TRP-CGG2-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH06J027091 Enhancer 1 ENCODE 600.7 +0.2 174 1.1 CREB1 GATAD2A ZNF629 PRDM10 LEF1 IKZF1 JUND PRDM1 PHF21A MTA1 TRP-CGG2-1 ZNF322 ABT1 BTN2A3P BTN2A2 GUSBP2 BTN2A1 HMGN4 ENSG00000261584 BTN3A2
GH06J027096 Enhancer 0.7 ENCODE 0.4 +5.3 5341 1.5 TARDBP ZNF24 EZH2 MGA POLR2A ATF3 FOS ZNF217 SIN3A FOSL2 TRS-GCT1-1 piR-34439-004 ENSG00000261584 BTN3A2 HCG11 TRP-CGG2-1 lnc-HIST1H2AG-4 H2BC11 ZNF322
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRP-CGG2-1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TRP-CGG2-1 Gene

Genomic Locations for TRP-CGG2-1 Gene
chr6:27,091,742-27,091,813
(GRCh38/hg38)
Size:
72 bases
Orientation:
Plus strand
chr6:27,059,521-27,059,592
(GRCh37/hg19)
Size:
72 bases
Orientation:
Plus strand

Genomic View for TRP-CGG2-1 Gene

Genes around TRP-CGG2-1 on UCSC Golden Path with GeneCards custom track
TRP-CGG2-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
TRP-CGG2-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRP-CGG2-1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for TRP-CGG2-1 Gene

Proteins for TRP-CGG2-1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for TRP-CGG2-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRP-CGG2-1 Gene

Domains & Families for TRP-CGG2-1 Gene

Gene Families for TRP-CGG2-1 Gene

HGNC:
genes like me logo Genes that share domains with TRP-CGG2-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRP-CGG2-1 Gene

Function for TRP-CGG2-1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for TRP-CGG2-1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRP-CGG2-1 Gene

Localization for TRP-CGG2-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRP-CGG2-1 Gene

Pathways & Interactions for TRP-CGG2-1 Gene

PathCards logo

SuperPathways for TRP-CGG2-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRP-CGG2-1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TRP-CGG2-1 Gene

Drugs & Compounds for TRP-CGG2-1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for TRP-CGG2-1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TRP-CGG2-1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00006744D5_9606 tRNA 72 4

HGNC: 34734,

GtRNAdb: tRNA-Pro-CGG-2-1:CM000668.1:27059521-27059592, tRNA-Pro-CGG-2-1:CM000668.2:27091742-27091813,

Rfam: RF00005,

ENA: HG983993.1:1..72:tRNA,

TRP-CGG2-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRP-CGG2-1 Gene

No ASD Table

Relevant External Links for TRP-CGG2-1 Gene

GeneLoc Exon Structure for
TRP-CGG2-1

No data available for mRNA/cDNA for TRP-CGG2-1 Gene

Expression for TRP-CGG2-1 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRP-CGG2-1 Gene

Orthologs for TRP-CGG2-1 Gene

No data available for Orthologs and Evolution for TRP-CGG2-1 Gene

Paralogs for TRP-CGG2-1 Gene

No data available for Paralogs for TRP-CGG2-1 Gene

Variants for TRP-CGG2-1 Gene

Additional Variant Information for TRP-CGG2-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRP-CGG2-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRP-CGG2-1 Gene

Disorders for TRP-CGG2-1 Gene

No disorders were found for TRP-CGG2-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRP-CGG2-1 Gene

Publications for TRP-CGG2-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3

No data available for Mastermind for TRP-CGG2-1 Gene

Products for TRP-CGG2-1 Gene

Sources for TRP-CGG2-1 Gene