TRP-CGG2-1 Gene (RNA Gene)

TRNA-Pro (Anticodon CGG) 2-1

GC06P027091
GIFtS:
5

Aliases for TRP-CGG2-1 Gene

Subcategory (RNA class) for TRP-CGG2-1 Gene

tRNA

Quality Score for this RNA gene is

13

Aliases for TRP-CGG2-1 Gene

  • TRNA-Pro (Anticodon CGG) 2-1 2 3
  • Transfer RNA Proline 10 (Anticodon CGG) 2 3
  • Transfer RNA-Pro (CGG) 2-1 2 3
  • TRNA-Pro-CGG-2-1 3 167
  • TRP-CGG2-1 2
  • TRNAP10 3
  • RF00005 174

External Ids for TRP-CGG2-1 Gene

Previous HGNC Symbols for TRP-CGG2-1 Gene

  • TRNAP10

Summaries for TRP-CGG2-1 Gene

GeneCards Summary for TRP-CGG2-1 Gene

TRP-CGG2-1 (TRNA-Pro (Anticodon CGG) 2-1) is an RNA Gene, and is affiliated with the tRNA class.

Rfam classification for TRP-CGG2-1 Gene

Additional gene information for TRP-CGG2-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TRP-CGG2-1 Gene

Genomics for TRP-CGG2-1 Gene

GeneHancer (GH) Regulatory Elements for TRP-CGG2-1 Gene

Promoters and enhancers for TRP-CGG2-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH06J027091 Enhancer 1 ENCODE 750.6 +0.2 174 1.1 GTF3C2 ZNF24 ZBTB40 LCORL SMARCE1 POLR2A MIXL1 ELF1 RBM39 L3MBTL2 TRP-CGG2-1 ABT1 BTN2A3P ZNF322 HMGN4 BTN2A1 BTN3A2 BTN2A2 GUSBP2 BTN3A1
GH06J027096 Enhancer 0.7 ENCODE 0.4 +5.3 5341 1.5 GTF3C2 ZBTB40 ELF1 L3MBTL2 MNT POLR2A ZBTB33 GMEB1 TARDBP ZNF24 TRS-GCT1-1 piR-34439-004 ENSG00000261584 ABT1 BTN2A3P BTN3A2 HCG11 TRP-CGG2-1 lnc-HIST1H2AG-4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRP-CGG2-1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRP-CGG2-1 Gene

Genomic Locations for TRP-CGG2-1 Gene
chr6:27,091,742-27,091,813
(GRCh38/hg38)
Size:
72 bases
Orientation:
Plus strand
chr6:27,059,521-27,059,592
(GRCh37/hg19)
Size:
72 bases
Orientation:
Plus strand

Genomic View for TRP-CGG2-1 Gene

Genes around TRP-CGG2-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRP-CGG2-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRP-CGG2-1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for TRP-CGG2-1 Gene

Proteins for TRP-CGG2-1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for TRP-CGG2-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRP-CGG2-1 Gene

Domains & Families for TRP-CGG2-1 Gene

Gene Families for TRP-CGG2-1 Gene

HGNC:
genes like me logo Genes that share domains with TRP-CGG2-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRP-CGG2-1 Gene

Function for TRP-CGG2-1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for TRP-CGG2-1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRP-CGG2-1 Gene

Localization for TRP-CGG2-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRP-CGG2-1 Gene

Pathways & Interactions for TRP-CGG2-1 Gene

PathCards logo

SuperPathways for TRP-CGG2-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRP-CGG2-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRP-CGG2-1 Gene

Drugs & Compounds for TRP-CGG2-1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for TRP-CGG2-1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for TRP-CGG2-1 Gene

(1) RNACentral transcripts :
(1) ENA transcripts :
(2) GtRNAdb transcripts :
(1) Rfam transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRP-CGG2-1 Gene

No ASD Table

Relevant External Links for TRP-CGG2-1 Gene

GeneLoc Exon Structure for
TRP-CGG2-1
ECgene alternative splicing isoforms for
TRP-CGG2-1

Expression for TRP-CGG2-1 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRP-CGG2-1 Gene

Orthologs for TRP-CGG2-1 Gene

No data available for Orthologs and Evolution for TRP-CGG2-1 Gene

Paralogs for TRP-CGG2-1 Gene

No data available for Paralogs for TRP-CGG2-1 Gene

Variants for TRP-CGG2-1 Gene

Additional Variant Information for TRP-CGG2-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRP-CGG2-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRP-CGG2-1 Gene

Disorders for TRP-CGG2-1 Gene

No disorders were found for TRP-CGG2-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRP-CGG2-1 Gene

Publications for TRP-CGG2-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3 56

No data available for External Links for TRP-CGG2-1 Gene

Products for TRP-CGG2-1 Gene

Sources for TRP-CGG2-1 Gene