Aliases for TRN-GTT17-1-001 Gene

Subcategory (RNA class) for TRN-GTT17-1-001 Gene

tRNA

Number of RNA Genes sources:

3 / 17

Aliases for TRN-GTT17-1-001 Gene

  • TRNA-Asn-GTT-17-1 162
  • TRN-GTT17-1 2
  • RF00005 168

No data available for External Ids for TRN-GTT17-1-001 Gene

Summaries for TRN-GTT17-1-001 Gene

GeneCards Summary for TRN-GTT17-1-001 Gene

TRN-GTT17-1-001 is an RNA Gene, and is affiliated with the tRNA class.

Rfam classification for TRN-GTT17-1-001 Gene

Additional gene information for TRN-GTT17-1-001 Gene


  • Search for TRN-GTT17-1-001 at DataMed
  • Search for TRN-GTT17-1-001 at HumanCyc

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TRN-GTT17-1-001 Gene

Genomics for TRN-GTT17-1-001 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TRN-GTT17-1-001 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J161620 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 600.7 +1.3 1304 4.8 ZNF221 SP1 TEAD4 PRDM10 ZNF629 LEF1 IKZF1 KDM1A ZNF692 BACH1 TRN-GTT17-1-001 DUSP12 USP21 FCGR2B FCGR3B DEDD PPOX ENSG00000215840 B4GALT3 FCGR3A
GH01J161626 Promoter/Enhancer 0.6 Ensembl dbSUPER 0.7 +4.4 4426 0.2 SPI1 HSALNG0007961 TRN-GTT17-1-001 FCGR3B FCGR2C
GH01J161627 Enhancer 0.4 ENCODE dbSUPER 0.4 +5.5 5533 0.9 EP400 HSALNG0007961 FCGR3B SDHC TRN-GTT17-1-001 FCGR2C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRN-GTT17-1-001 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TRN-GTT17-1-001 Gene

Genomic Locations for TRN-GTT17-1-001 Gene
chr1:161,621,675-161,621,748
(GRCh38/hg38)
Size:
74 bases
Orientation:
Plus strand

Genomic View for TRN-GTT17-1-001 Gene

Genes around TRN-GTT17-1-001 on UCSC Golden Path with GeneCards custom track
TRN-GTT17-1-001 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

TRN-GTT17-1-001 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRN-GTT17-1-001 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for TRN-GTT17-1-001 Gene

Proteins for TRN-GTT17-1-001 Gene

Post-translational modifications for TRN-GTT17-1-001 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRN-GTT17-1-001 Gene

Domains & Families for TRN-GTT17-1-001 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRN-GTT17-1-001 Gene

Function for TRN-GTT17-1-001 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRN-GTT17-1-001 Gene

Localization for TRN-GTT17-1-001 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRN-GTT17-1-001 Gene

Pathways & Interactions for TRN-GTT17-1-001 Gene

PathCards logo

SuperPathways for TRN-GTT17-1-001 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRN-GTT17-1-001 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TRN-GTT17-1-001 Gene

Drugs & Compounds for TRN-GTT17-1-001 Gene

No Compound Related Data Available

Transcripts for TRN-GTT17-1-001 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TRN-GTT17-1-001 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00006C6310_9606 tRNA 74 4

HGNC: 34657,

GtRNAdb: tRNA-Asn-GTT-17-1:CM000663.1:161591465-161591538, tRNA-Asn-GTT-17-1:CM000663.2:161621675-161621748,

Rfam: RF00005,

ENA: HG983657.1:1..74:tRNA,

TRN-GTT17-1-001 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for TRN-GTT17-1-001 Gene

No ASD Table

Relevant External Links for TRN-GTT17-1-001 Gene

GeneLoc Exon Structure for
TRN-GTT17-1-001

No data available for mRNA/cDNA for TRN-GTT17-1-001 Gene

Expression for TRN-GTT17-1-001 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRN-GTT17-1-001 Gene

Orthologs for TRN-GTT17-1-001 Gene

No data available for Orthologs and Evolution for TRN-GTT17-1-001 Gene

Paralogs for TRN-GTT17-1-001 Gene

No data available for Paralogs for TRN-GTT17-1-001 Gene

Variants for TRN-GTT17-1-001 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for TRN-GTT17-1-001 Gene

Disorders for TRN-GTT17-1-001 Gene

No disorders were found for TRN-GTT17-1-001 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRN-GTT17-1-001 Gene

Publications for TRN-GTT17-1-001 Gene

No publications were found for TRN-GTT17-1-001 Gene.

No data available for Mastermind for TRN-GTT17-1-001 Gene

Products for TRN-GTT17-1-001 Gene

Sources for TRN-GTT17-1-001 Gene