Aliases for TRMT10BP1 Gene

Aliases for TRMT10BP1 Gene

  • TRNA Methyltransferase 10B Pseudogene 1 2 5

External Ids for TRMT10BP1 Gene

Summaries for TRMT10BP1 Gene

GeneCards Summary for TRMT10BP1 Gene

TRMT10BP1 (TRNA Methyltransferase 10B Pseudogene 1) is a Pseudogene.

Additional gene information for TRMT10BP1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TRMT10BP1 Gene

Genomics for TRMT10BP1 Gene

GeneHancer (GH) Regulatory Elements for TRMT10BP1 Gene

Promoters and enhancers for TRMT10BP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J108647 Enhancer 0.3 Ensembl 500.7 +1.6 1554 0.4 FOS TRMT10BP1 lnc-EMC2-8 TMEM74 lnc-TMEM74-2
GH08J108599 Enhancer 1 Ensembl ENCODE 0.3 -45.7 -45688 1.4 ZNF217 ZSCAN5C TCF7 TRIM28 TEAD1 ATF2 OSR2 BCL11A WT1 FOXA2 ENSG00000253949 LOC101060000 TRMT10BP1
GH08J108652 Promoter 0.5 Ensembl 0.4 +6.6 6555 0.4 MYC MAX lnc-EMC2-8 TRMT10BP1 TMEM74 lnc-TMEM74-2
GH08J108651 Enhancer 0.4 ENCODE 0.4 +6.2 6221 0.2 SPI1 MYC MAX lnc-EMC2-8 TRMT10BP1 TMEM74 lnc-TMEM74-2
GH08J108584 Enhancer 0.8 Ensembl ENCODE 0.2 -61.1 -61145 1 ZFX KLF4 CUX1 CTBP1 MEF2B ZFHX2 GATA3 MYC EBF1 IKZF1 ENSG00000253949 LOC101060000 TRMT10BP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRMT10BP1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRMT10BP1 Gene

Genomic Locations for TRMT10BP1 Gene
chr8:108,645,646-108,653,521
(GRCh38/hg38)
Size:
7,876 bases
Orientation:
Plus strand
chr8:109,664,602-109,665,544
(GRCh37/hg19)
Size:
943 bases
Orientation:
Plus strand

Genomic View for TRMT10BP1 Gene

Genes around TRMT10BP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRMT10BP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRMT10BP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for TRMT10BP1 Gene

Proteins for TRMT10BP1 Gene

Post-translational modifications for TRMT10BP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRMT10BP1 Gene

Domains & Families for TRMT10BP1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRMT10BP1 Gene

Function for TRMT10BP1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRMT10BP1 Gene

Localization for TRMT10BP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRMT10BP1 Gene

Pathways & Interactions for TRMT10BP1 Gene

PathCards logo

SuperPathways for TRMT10BP1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for TRMT10BP1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TRMT10BP1 Gene

Drugs & Compounds for TRMT10BP1 Gene

No Compound Related Data Available

Transcripts for TRMT10BP1 Gene

mRNA/cDNA for TRMT10BP1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TRMT10BP1 Gene

No ASD Table

Relevant External Links for TRMT10BP1 Gene

GeneLoc Exon Structure for
TRMT10BP1

Expression for TRMT10BP1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRMT10BP1 Gene

Orthologs for TRMT10BP1 Gene

Evolution for TRMT10BP1 Gene

ENSEMBL:
Gene Tree for TRMT10BP1 (if available)
TreeFam:
Gene Tree for TRMT10BP1 (if available)

No data available for Orthologs for TRMT10BP1 Gene

Paralogs for TRMT10BP1 Gene

No data available for Paralogs for TRMT10BP1 Gene

Variants for TRMT10BP1 Gene

Additional Variant Information for TRMT10BP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRMT10BP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRMT10BP1 Gene

Disorders for TRMT10BP1 Gene

No disorders were found for TRMT10BP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRMT10BP1 Gene

Publications for TRMT10BP1 Gene

No publications were found for TRMT10BP1 Gene.

No data available for Mastermind for TRMT10BP1 Gene

Products for TRMT10BP1 Gene

Sources for TRMT10BP1 Gene