TRM-CAT5-1 Gene (RNA Gene)

TRNA-Met (Anticodon CAT) 5-1

GC06P029296
GIFtS:
6
See more...

Aliases for TRM-CAT5-1 Gene

Subcategory (RNA class) for TRM-CAT5-1 Gene

tRNA

Number of RNA Genes sources:

3 / 17

Aliases for TRM-CAT5-1 Gene

  • TRNA-Met (Anticodon CAT) 5-1 2 3
  • Transfer RNA Methionine 16 (Anticodon CAU) 2 3
  • Transfer RNA-Met (CAT) 5-1 2 3
  • TRNA-Met-CAT-5-1 2 162
  • TRNA-Met (CAT) 5-1 3
  • TRNA-Met-CAT-5-2 162
  • TRM-CAT5-1 2
  • TRNAM16 3
  • RF00005 168

External Ids for TRM-CAT5-1 Gene

Previous HGNC Symbols for TRM-CAT5-1 Gene

  • TRNAM16

Previous GeneCards Identifiers for TRM-CAT5-1 Gene

  • GC06M026800

Summaries for TRM-CAT5-1 Gene

GeneCards Summary for TRM-CAT5-1 Gene

TRM-CAT5-1 (TRNA-Met (Anticodon CAT) 5-1) is an RNA Gene, and is affiliated with the tRNA class.

Rfam classification for TRM-CAT5-1 Gene

Additional gene information for TRM-CAT5-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TRM-CAT5-1 Gene

Genomics for TRM-CAT5-1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for TRM-CAT5-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH06J026702 Enhancer 0.9 ENCODE 600.7 +0.0 44 0.2 TEAD4 LEF1 DDX20 PKNOX1 ZNF24 MTA1 REST NR2C1 BRD9 DPF2 TRM-CAT5-1 ENSG00000261584 BTN2A1 ZNF322 TRA-AGC13-1-001 LOC105374991 H2BC11
GH06J026701 Enhancer 0.6 ENCODE 600.7 +0.5 504 0.2 IKZF1 PRDM1 DDX20 CEBPA MTA3 TSC22D4 HDAC2 CEBPB AFF1 CEBPG TRM-CAT5-1 BTN2A1 TRA-AGC13-1-001 LOC105374991 ZNF322 H2BC11
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRM-CAT5-1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TRM-CAT5-1 Gene

Genomic Locations for TRM-CAT5-1 Gene
chr6:26,701,483-26,701,555
(GRCh38/hg38)
Size:
73 bases
Orientation:
Plus strand
chr6:26,701,712-26,701,784
(GRCh37/hg19)
Size:
73 bases
Orientation:
Plus strand

Genomic View for TRM-CAT5-1 Gene

Genes around TRM-CAT5-1 on UCSC Golden Path with GeneCards custom track
TRM-CAT5-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
TRM-CAT5-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRM-CAT5-1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for TRM-CAT5-1 Gene

Proteins for TRM-CAT5-1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for TRM-CAT5-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRM-CAT5-1 Gene

Domains & Families for TRM-CAT5-1 Gene

Gene Families for TRM-CAT5-1 Gene

HGNC:
genes like me logo Genes that share domains with TRM-CAT5-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRM-CAT5-1 Gene

Function for TRM-CAT5-1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRM-CAT5-1 Gene

Localization for TRM-CAT5-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRM-CAT5-1 Gene

Pathways & Interactions for TRM-CAT5-1 Gene

PathCards logo

SuperPathways for TRM-CAT5-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRM-CAT5-1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TRM-CAT5-1 Gene

Drugs & Compounds for TRM-CAT5-1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for TRM-CAT5-1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TRM-CAT5-1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00006F50E3_9606 tRNA 73 4

HGNC: 34869,

GtRNAdb: tRNA-Met-CAT-5-1:CM000668.1:26701712-26701784, tRNA-Met-CAT-5-1:CM000668.2:26701483-26701555, tRNA-Met-CAT-5-2:CM000668.2:26800113-26800185,

Rfam: RF00005,

ENA: HG983957.1:1..73:tRNA,

TRM-CAT5-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRM-CAT5-1 Gene

No ASD Table

Relevant External Links for TRM-CAT5-1 Gene

GeneLoc Exon Structure for
TRM-CAT5-1

No data available for mRNA/cDNA for TRM-CAT5-1 Gene

Expression for TRM-CAT5-1 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRM-CAT5-1 Gene

Orthologs for TRM-CAT5-1 Gene

No data available for Orthologs and Evolution for TRM-CAT5-1 Gene

Paralogs for TRM-CAT5-1 Gene

No data available for Paralogs for TRM-CAT5-1 Gene

Variants for TRM-CAT5-1 Gene

Additional Variant Information for TRM-CAT5-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRM-CAT5-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRM-CAT5-1 Gene

Disorders for TRM-CAT5-1 Gene

No disorders were found for TRM-CAT5-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRM-CAT5-1 Gene

Publications for TRM-CAT5-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3

No data available for Mastermind for TRM-CAT5-1 Gene

Products for TRM-CAT5-1 Gene

Sources for TRM-CAT5-1 Gene