Aliases for TRM-CAT3-1 Gene

Subcategory (RNA class) for TRM-CAT3-1 Gene


Number of RNA Genes sources:

3 / 17

Aliases for TRM-CAT3-1 Gene

  • TRNA-Met (Anticodon CAT) 3-1 2 3
  • Transfer RNA Methionine 12 (Anticodon CAU) 2 3
  • Transfer RNA-Met (CAT) 3-1 2 3
  • TRNA-Met-CAT-3-1 2 162
  • TRNA-Met (CAT) 3-1 3
  • TRNA-Met-CAT-3-2 162
  • TRM-CAT3-1 2
  • TRM-CAT3-2 2
  • TRNAM12 3
  • RF00005 168

External Ids for TRM-CAT3-1 Gene

Previous HGNC Symbols for TRM-CAT3-1 Gene

  • TRNAM12

Summaries for TRM-CAT3-1 Gene

GeneCards Summary for TRM-CAT3-1 Gene

TRM-CAT3-1 (TRNA-Met (Anticodon CAT) 3-1) is an RNA Gene, and is affiliated with the tRNA class.

Rfam classification for TRM-CAT3-1 Gene

Additional gene information for TRM-CAT3-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TRM-CAT3-1 Gene

Genomics for TRM-CAT3-1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TRM-CAT3-1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J028946 Enhancer 0.4 Ensembl 600.7 +1.9 1926 0.2 YBX1 KDM1A ESRRA HDAC1 TRM-CAT3-1 lnc-TRIM27-17 HCG15 ENSG00000244349 TRIM27 HCG14 LINC01556 ZNF311 RF00017-5395
GH06J028939 Promoter/Enhancer 1.9 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 -2.3 -2343 6.1 ZNF221 CEBPG CREB1 GATAD2A ATF7 TEAD4 PRDM10 ZNF629 TFE3 ZNF512 LINC01556 TRL-AAG2-2 TRL-CAA1-2 TRQ-CTG1-3 piR-36378-008 lnc-OR2J1-12 ZSCAN12 ZKSCAN8 ZKSCAN3 ZSCAN23
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRM-CAT3-1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TRM-CAT3-1 Gene

Genomic Locations for TRM-CAT3-1 Gene
73 bases
Plus strand
73 bases
Plus strand

Genomic View for TRM-CAT3-1 Gene

Genes around TRM-CAT3-1 on UCSC Golden Path with GeneCards custom track
TRM-CAT3-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
TRM-CAT3-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRM-CAT3-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRM-CAT3-1 Gene

Proteins for TRM-CAT3-1 Gene

Post-translational modifications for TRM-CAT3-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRM-CAT3-1 Gene

Domains & Families for TRM-CAT3-1 Gene

Gene Families for TRM-CAT3-1 Gene

genes like me logo Genes that share domains with TRM-CAT3-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRM-CAT3-1 Gene

Function for TRM-CAT3-1 Gene

Phenotypes From GWAS Catalog for TRM-CAT3-1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRM-CAT3-1 Gene

Localization for TRM-CAT3-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRM-CAT3-1 Gene

Pathways & Interactions for TRM-CAT3-1 Gene

PathCards logo

SuperPathways for TRM-CAT3-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRM-CAT3-1 Gene


No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TRM-CAT3-1 Gene

Drugs & Compounds for TRM-CAT3-1 Gene

No Compound Related Data Available

Transcripts for TRM-CAT3-1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TRM-CAT3-1 Gene

TRM-CAT3-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRM-CAT3-1 Gene

No ASD Table

Relevant External Links for TRM-CAT3-1 Gene

GeneLoc Exon Structure for

No data available for mRNA/cDNA for TRM-CAT3-1 Gene

Expression for TRM-CAT3-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRM-CAT3-1 Gene

Orthologs for TRM-CAT3-1 Gene

No data available for Orthologs and Evolution for TRM-CAT3-1 Gene

Paralogs for TRM-CAT3-1 Gene

No data available for Paralogs for TRM-CAT3-1 Gene

Variants for TRM-CAT3-1 Gene

Additional Variant Information for TRM-CAT3-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRM-CAT3-1 Gene

Disorders for TRM-CAT3-1 Gene

No disorders were found for TRM-CAT3-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRM-CAT3-1 Gene

Publications for TRM-CAT3-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3

No data available for Mastermind for TRM-CAT3-1 Gene

Products for TRM-CAT3-1 Gene

Sources for TRM-CAT3-1 Gene