Aliases for TRL-CAG2-2 Gene

Subcategory (RNA class) for TRL-CAG2-2 Gene

tRNA

Number of RNA Genes sources:

3 / 14

Aliases for TRL-CAG2-2 Gene

  • TRNA-Leu (Anticodon CAG) 2-2 2 3
  • Transfer RNA Leucine 11 (Anticodon CAG) 2 3
  • Transfer RNA-Leu (CAG) 2-2 2 3
  • TRNA-Leu (CAG) 2-2 3
  • TRNA-Leu-CAG-2-2 165
  • TRNA-Leu-CAG-2-1 165
  • TRL-CAG2-2 2
  • TRL-CAG2-1 2
  • TRNAL11 3
  • RF00005 172

External Ids for TRL-CAG2-2 Gene

Previous HGNC Symbols for TRL-CAG2-2 Gene

  • TRNAL11

Summaries for TRL-CAG2-2 Gene

GeneCards Summary for TRL-CAG2-2 Gene

TRL-CAG2-2 (TRNA-Leu (Anticodon CAG) 2-2) is an RNA Gene, and is affiliated with the tRNA class.

Rfam classification for TRL-CAG2-2 Gene

Additional gene information for TRL-CAG2-2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TRL-CAG2-2 Gene

Genomics for TRL-CAG2-2 Gene

GeneHancer (GH) Regulatory Elements for TRL-CAG2-2 Gene

Promoters and enhancers for TRL-CAG2-2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J057298 Promoter/Enhancer 1.8 ENCODE CraniofacialAtlas dbSUPER 500.7 +0.5 483 2.8 FOXK2 ZBTB40 ZNF217 EP300 CTCF TCF12 NRF1 SP1 BCLAF1 NCOR1 TRL-CAG2-1 TRL-CAG2-2 POLR2C LOC101927556 PSME3IP1 NUP93 CCL22 CCDC102A CX3CL1 RSPRY1
GH16J057303 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.7 -3.8 -3839 3.2 EP300 TCF12 POLR2G NCOR1 KDM6A ZNF623 RELA ZBTB25 TGIF2 RAD21 CCL22 CX3CL1 ARL2BP TRL-CAG2-2 lnc-CCL22-2 RPL23AP91
GH16J057314 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -15.9 -15938 5 JUND TEAD4 FOS ZIC2 EP300 ZNF274 RBM25 NFIC GABPA REST HERPUD1 ENSG00000260545 RPL23AP91 lnc-CCL22-2 TRL-CAG2-2
GH16J057310 Enhancer 0.6 Ensembl dbSUPER 0.4 -10.3 -10338 1.8 SCRT1 EGR2 ZNF770 ZSCAN4 SCRT2 PSME3IP1 lnc-CCL22-2 RPL23AP91 TRL-CAG2-2
GH16J057306 Enhancer 0.5 dbSUPER 0.4 -6.9 -6895 1.9 HES1 FOXA2 EGR1 TEAD3 FOXA1 SCRT2 CCL22 CX3CL1 PLLP ARL2BP ENSG00000261114 TRL-CAG2-2 lnc-CCL22-2 RPL23AP91
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRL-CAG2-2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRL-CAG2-2 Gene

Genomic Locations for TRL-CAG2-2 Gene
chr16:57,300,480-57,300,562
(GRCh38/hg38)
Size:
83 bases
Orientation:
Minus strand
chr16:57,334,392-57,334,474
(GRCh37/hg19)
Size:
83 bases
Orientation:
Minus strand

Genomic View for TRL-CAG2-2 Gene

Genes around TRL-CAG2-2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRL-CAG2-2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRL-CAG2-2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRL-CAG2-2 Gene

Proteins for TRL-CAG2-2 Gene

Post-translational modifications for TRL-CAG2-2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRL-CAG2-2 Gene

Domains & Families for TRL-CAG2-2 Gene

Gene Families for TRL-CAG2-2 Gene

genes like me logo Genes that share domains with TRL-CAG2-2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRL-CAG2-2 Gene

Function for TRL-CAG2-2 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRL-CAG2-2 Gene

Localization for TRL-CAG2-2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRL-CAG2-2 Gene

Pathways & Interactions for TRL-CAG2-2 Gene

PathCards logo

SuperPathways for TRL-CAG2-2 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for TRL-CAG2-2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TRL-CAG2-2 Gene

Drugs & Compounds for TRL-CAG2-2 Gene

No Compound Related Data Available

Transcripts for TRL-CAG2-2 Gene

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRL-CAG2-2 Gene

No ASD Table

Relevant External Links for TRL-CAG2-2 Gene

GeneLoc Exon Structure for
TRL-CAG2-2

Expression for TRL-CAG2-2 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRL-CAG2-2 Gene

Orthologs for TRL-CAG2-2 Gene

No data available for Orthologs and Evolution for TRL-CAG2-2 Gene

Paralogs for TRL-CAG2-2 Gene

No data available for Paralogs for TRL-CAG2-2 Gene

Variants for TRL-CAG2-2 Gene

Additional Variant Information for TRL-CAG2-2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRL-CAG2-2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRL-CAG2-2 Gene

Disorders for TRL-CAG2-2 Gene

No disorders were found for TRL-CAG2-2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRL-CAG2-2 Gene

Publications for TRL-CAG2-2 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3 54

No data available for Mastermind for TRL-CAG2-2 Gene

Products for TRL-CAG2-2 Gene

Sources for TRL-CAG2-2 Gene