Aliases for TRL-CAA5-1 Gene

Subcategory (RNA class) for TRL-CAA5-1 Gene

tRNA

Number of RNA Genes sources:

3 / 17

Aliases for TRL-CAA5-1 Gene

  • TRNA-Leu (CAA) 5-1 2 3
  • Transfer RNA Leucine 36 (Anticodon CAA) 2 3
  • Transfer RNA-Leu (CAA) 5-1 2 3
  • TRNA-Leu-CAA-5-1 2 162
  • TRL-CAA5-1 2
  • TRNAL36 3
  • RF00005 168

External Ids for TRL-CAA5-1 Gene

Previous HGNC Symbols for TRL-CAA5-1 Gene

  • TRNAL36

Summaries for TRL-CAA5-1 Gene

GeneCards Summary for TRL-CAA5-1 Gene

TRL-CAA5-1 (TRNA-Leu (CAA) 5-1) is an RNA Gene, and is affiliated with the tRNA class.

Rfam classification for TRL-CAA5-1 Gene

Additional gene information for TRL-CAA5-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TRL-CAA5-1 Gene

Genomics for TRL-CAA5-1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TRL-CAA5-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J009273 Enhancer 0.8 FANTOM5 ENCODE 600.7 -1.4 -1402 0.9 PKNOX1 SCRT2 CEBPB SPI1 ATF4 CEBPG MEIS2 POLR2A TRL-CAA5-1 piR-50443-058 DENND5A NRIP3 TMEM41B SCUBE2 ZNF143 IPO7 TMEM9B
GH11J009274 Enhancer 0.4 ENCODE 600.7 -0.1 -121 0.9 ZNF512 PRDM1 ZNF366 ZNF781 TRL-CAA5-1 AKIP1 SCUBE2 TMEM41B piR-50443-058 DENND5A
GH11J009275 Enhancer 0.4 ENCODE 600.7 -0.6 -600 0 ZNF512 PRDM1 ZNF366 TRL-CAA5-1 piR-50443-058 DENND5A TMEM41B
GH11J009276 Enhancer 0.4 ENCODE 600.7 +1.5 1526 0.2 RAD21 SMC3 CTCF TRL-CAA5-1 ENSG00000273725 DENND5A TMEM41B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRL-CAA5-1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TRL-CAA5-1 Gene

Genomic Locations for TRL-CAA5-1 Gene
chr11:9,275,243-9,275,316
(GRCh38/hg38)
Size:
74 bases
Orientation:
Plus strand
chr11:9,296,790-9,296,863
(GRCh37/hg19)
Size:
74 bases
Orientation:
Plus strand

Genomic View for TRL-CAA5-1 Gene

Genes around TRL-CAA5-1 on UCSC Golden Path with GeneCards custom track
TRL-CAA5-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
TRL-CAA5-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRL-CAA5-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRL-CAA5-1 Gene

Proteins for TRL-CAA5-1 Gene

Post-translational modifications for TRL-CAA5-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRL-CAA5-1 Gene

Domains & Families for TRL-CAA5-1 Gene

Gene Families for TRL-CAA5-1 Gene

genes like me logo Genes that share domains with TRL-CAA5-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRL-CAA5-1 Gene

Function for TRL-CAA5-1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRL-CAA5-1 Gene

Localization for TRL-CAA5-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRL-CAA5-1 Gene

Pathways & Interactions for TRL-CAA5-1 Gene

PathCards logo

SuperPathways for TRL-CAA5-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRL-CAA5-1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TRL-CAA5-1 Gene

Drugs & Compounds for TRL-CAA5-1 Gene

No Compound Related Data Available

Transcripts for TRL-CAA5-1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TRL-CAA5-1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007142C3_9606 tRNA 74 4

HGNC: 34938,

GtRNAdb: tRNA-Leu-CAA-5-1:CM000673.1:9296790-9296863, tRNA-Leu-CAA-5-1:CM000673.2:9275243-9275316,

Rfam: RF00005,

ENA: HG983886.1:1..74:tRNA,

TRL-CAA5-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRL-CAA5-1 Gene

No ASD Table

Relevant External Links for TRL-CAA5-1 Gene

GeneLoc Exon Structure for
TRL-CAA5-1

No data available for mRNA/cDNA for TRL-CAA5-1 Gene

Expression for TRL-CAA5-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRL-CAA5-1 Gene

Orthologs for TRL-CAA5-1 Gene

No data available for Orthologs and Evolution for TRL-CAA5-1 Gene

Paralogs for TRL-CAA5-1 Gene

No data available for Paralogs for TRL-CAA5-1 Gene

Variants for TRL-CAA5-1 Gene

Additional Variant Information for TRL-CAA5-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRL-CAA5-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRL-CAA5-1 Gene

Disorders for TRL-CAA5-1 Gene

No disorders were found for TRL-CAA5-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRL-CAA5-1 Gene

Publications for TRL-CAA5-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3

No data available for Mastermind for TRL-CAA5-1 Gene

Products for TRL-CAA5-1 Gene

Sources for TRL-CAA5-1 Gene