Aliases for TRK-TTT1-1 Gene

Subcategory (RNA class) for TRK-TTT1-1 Gene

tRNA

Number of RNA Genes sources:

3 / 17

Aliases for TRK-TTT1-1 Gene

  • TRNA-Lys (Anticodon TTT) 1-1 2 3
  • Transfer RNA Lysine 17 (Anticodon UUU) 2 3
  • Transfer RNA-Lys (TTT) 1-1 2 3
  • TRNA-Lys-TTT-1-1 2 162
  • TRNA-Lys (TTT) 1-1 3
  • TRK-TTT1-1 2
  • TRNAK17 3
  • RF00005 168

External Ids for TRK-TTT1-1 Gene

Previous HGNC Symbols for TRK-TTT1-1 Gene

  • TRNAK17

Summaries for TRK-TTT1-1 Gene

GeneCards Summary for TRK-TTT1-1 Gene

TRK-TTT1-1 (TRNA-Lys (Anticodon TTT) 1-1) is an RNA Gene, and is affiliated with the tRNA class.

Rfam classification for TRK-TTT1-1 Gene

Additional gene information for TRK-TTT1-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TRK-TTT1-1 Gene

Genomics for TRK-TTT1-1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TRK-TTT1-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J073482 Promoter/Enhancer 1.5 UCNEbase EPDnew Ensembl ENCODE CraniofacialAtlas 0.4 -5.3 -5331 2.2 TEAD4 POLR2A SMARCA4 NANOG SP1 POU5F1 LINC01568 TRK-TTT1-1 piR-35462-002 lnc-PSMD7-6 ZFHX3 lnc-CLEC18B-44 LOC107984814
GH16J073505 Enhancer 0.2 Ensembl 0.3 -27.4 -27412 0.4 lnc-PSMD7-6 TRK-TTT1-1 piR-35462-002 ZFHX3 lnc-CLEC18B-44 LOC107984814
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRK-TTT1-1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TRK-TTT1-1 Gene

Genomic Locations for TRK-TTT1-1 Gene
chr16:73,478,317-73,478,389
(GRCh38/hg38)
Size:
73 bases
Orientation:
Minus strand
chr16:73,512,216-73,512,288
(GRCh37/hg19)
Size:
73 bases
Orientation:
Minus strand

Genomic View for TRK-TTT1-1 Gene

Genes around TRK-TTT1-1 on UCSC Golden Path with GeneCards custom track
TRK-TTT1-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
TRK-TTT1-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRK-TTT1-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRK-TTT1-1 Gene

Proteins for TRK-TTT1-1 Gene

Post-translational modifications for TRK-TTT1-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRK-TTT1-1 Gene

Domains & Families for TRK-TTT1-1 Gene

Gene Families for TRK-TTT1-1 Gene

genes like me logo Genes that share domains with TRK-TTT1-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRK-TTT1-1 Gene

Function for TRK-TTT1-1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRK-TTT1-1 Gene

Localization for TRK-TTT1-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRK-TTT1-1 Gene

Pathways & Interactions for TRK-TTT1-1 Gene

PathCards logo

SuperPathways for TRK-TTT1-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRK-TTT1-1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TRK-TTT1-1 Gene

Drugs & Compounds for TRK-TTT1-1 Gene

No Compound Related Data Available

Transcripts for TRK-TTT1-1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TRK-TTT1-1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00006587E4_9606 tRNA 73 4

HGNC: 34687,

GtRNAdb: tRNA-Lys-TTT-1-1:CM000678.1:73512216-73512288, tRNA-Lys-TTT-1-1:CM000678.2:73478317-73478389,

Rfam: RF00005,

ENA: HG983929.1:1..73:tRNA,

TRK-TTT1-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRK-TTT1-1 Gene

No ASD Table

Relevant External Links for TRK-TTT1-1 Gene

GeneLoc Exon Structure for
TRK-TTT1-1

No data available for mRNA/cDNA for TRK-TTT1-1 Gene

Expression for TRK-TTT1-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRK-TTT1-1 Gene

Orthologs for TRK-TTT1-1 Gene

No data available for Orthologs and Evolution for TRK-TTT1-1 Gene

Paralogs for TRK-TTT1-1 Gene

No data available for Paralogs for TRK-TTT1-1 Gene

Variants for TRK-TTT1-1 Gene

Additional Variant Information for TRK-TTT1-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRK-TTT1-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRK-TTT1-1 Gene

Disorders for TRK-TTT1-1 Gene

No disorders were found for TRK-TTT1-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRK-TTT1-1 Gene

Publications for TRK-TTT1-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3

No data available for Mastermind for TRK-TTT1-1 Gene

Products for TRK-TTT1-1 Gene

Sources for TRK-TTT1-1 Gene