Aliases for TRIM80P Gene

Aliases for TRIM80P Gene

  • Tripartite Motif Containing 80, Pseudogene 2 3 5
  • TRIM47LP 2 3
  • TRIM80P 5

External Ids for TRIM80P Gene

Previous GeneCards Identifiers for TRIM80P Gene

  • GC11P089576
  • GC00U936195
  • GC17P075075
  • GC17P075129
  • GC17P075138
  • GC17P075141
  • GC17P075152
  • GC17P075076
  • GC17P075081
  • GC17P075103
  • GC17P075107
  • GC17P075113
  • GC17P075115
  • GC17P075119

Summaries for TRIM80P Gene

GeneCards Summary for TRIM80P Gene

TRIM80P (Tripartite Motif Containing 80, Pseudogene) is a Pseudogene.

Additional gene information for TRIM80P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TRIM80P Gene

Genomics for TRIM80P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TRIM80P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J075073 Enhancer 0.9 ENCODE dbSUPER 608.7 -0.1 -95 1.6 PRDM10 IKZF1 PKNOX1 NR2C1 HDAC1 SOX6 CEBPA EP300 UBTF MTA3 TRIM80P KCTD2 ATP5PD JPT1 TMEM94 CDR2L MRPS7 lnc-KCTD2-1 SLC16A5
GH17J075076 Promoter/Enhancer 2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 8.5 +4.2 4221 3.9 SP1 HNRNPL GATAD2A ZBTB33 REST TFE3 SOX13 NFKBIZ RCOR2 BACH1 SLC16A5 MRPS7 TRIM80P HID1 CDR2L SUMO2 LLGL2 ARMC7 RAB37 HSALNG0118706
GH17J075072 Enhancer 0.9 ENCODE 0.7 -2.1 -2105 0.2 LEF1 JUND DDX20 PKNOX1 ZNF24 DPF2 HDAC1 SOX6 TCF12 EP300 ATP5PD KCTD2 JPT1 TMEM94 TRIM80P lnc-KCTD2-1 SLC16A5
GH17J075083 Enhancer 1.1 ENCODE dbSUPER 0.4 +9.9 9871 0.9 GATAD2A REST TFE3 SOX13 NFKBIZ RCOR2 PRDM1 RFX1 ZIC2 RXRB SLC16A5 MRPL58 HSALNG0118706 TRIM80P ATP5PD
GH17J075069 Enhancer 0.6 Ensembl 0.7 -4.3 -4337 0.3 CTCF REST RAD21 SMC3 DEK SAP130 RFX5 GATA3 ARID3A MIXL1 MN298678-030 lnc-KCTD2-1 piR-58581 JPT1 ATP5PD KCTD2 NT5C RNU6-362P TMEM94 TRIM80P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRIM80P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TRIM80P Gene

Genomic Locations for TRIM80P Gene
chr17:75,074,306-75,079,549
(GRCh38/hg38)
Size:
5,244 bases
Orientation:
Plus strand
chr17:73,070,401-73,075,644
(GRCh37/hg19)
Size:
5,244 bases
Orientation:
Plus strand

Genomic View for TRIM80P Gene

Genes around TRIM80P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRIM80P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRIM80P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRIM80P Gene

Proteins for TRIM80P Gene

Post-translational modifications for TRIM80P Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRIM80P Gene

Domains & Families for TRIM80P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRIM80P Gene

Function for TRIM80P Gene

Phenotypes From GWAS Catalog for TRIM80P Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRIM80P Gene

Localization for TRIM80P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRIM80P Gene

Pathways & Interactions for TRIM80P Gene

PathCards logo

SuperPathways for TRIM80P Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRIM80P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TRIM80P Gene

Drugs & Compounds for TRIM80P Gene

No Compound Related Data Available

Transcripts for TRIM80P Gene

mRNA/cDNA for TRIM80P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRIM80P Gene

No ASD Table

Relevant External Links for TRIM80P Gene

GeneLoc Exon Structure for
TRIM80P

Expression for TRIM80P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRIM80P Gene

Orthologs for TRIM80P Gene

Evolution for TRIM80P Gene

ENSEMBL:
Gene Tree for TRIM80P (if available)
TreeFam:
Gene Tree for TRIM80P (if available)

No data available for Orthologs for TRIM80P Gene

Paralogs for TRIM80P Gene

No data available for Paralogs for TRIM80P Gene

Variants for TRIM80P Gene

Additional Variant Information for TRIM80P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRIM80P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRIM80P Gene

Disorders for TRIM80P Gene

No disorders were found for TRIM80P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRIM80P Gene

Publications for TRIM80P Gene

No publications were found for TRIM80P Gene.

Products for TRIM80P Gene

Sources for TRIM80P Gene