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Aliases for TRIM80P Gene

Aliases for TRIM80P Gene

  • Tripartite Motif Containing 80, Pseudogene 2 3 5
  • TRIM47LP 3

External Ids for TRIM80P Gene

Previous GeneCards Identifiers for TRIM80P Gene

  • GC11P089576
  • GC00U936195
  • GC17P075075
  • GC17P075076
  • GC17P075081
  • GC17P075103
  • GC17P075107
  • GC17P075113

Summaries for TRIM80P Gene

GeneCards Summary for TRIM80P Gene

TRIM80P (Tripartite Motif Containing 80, Pseudogene) is a Pseudogene.

Additional gene information for TRIM80P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRIM80P Gene

Genomics for TRIM80P Gene

GeneHancer (GH) Regulatory Elements for TRIM80P Gene

Promoters and enhancers for TRIM80P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J075073 Enhancer 1 ENCODE dbSUPER 658.8 -0.1 -95 1.6 MYRF HDAC1 MEIS2 PKNOX1 TEAD4 CEBPG ZNF48 TCF12 CTBP1 MTA3 TRIM80P KCTD2 ATP5PD JPT1 TMEM94 CDR2L MRPS7 PIR52580
GH17J075077 Enhancer 0.4 Ensembl dbSUPER 650.7 +2.0 1994 0.2 TRIM80P ATP5PD KCTD2 JPT1 TMEM94 SLC16A5
GH17J075076 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 8.6 +4.4 4382 3.5 FOXA2 MLX ARID4B DMAP1 IRF4 YY1 ZNF143 FOS SP5 ZHX2 SLC16A5 UNK NT5C ENSG00000266980 NUP85 MRPS7 SRP68 TRIM80P HID1 CDR2L
GH17J075072 Enhancer 0.9 ENCODE 0.7 -2.1 -2105 0.2 HDGF PKNOX1 ATF1 FOXA2 ARNT TCF12 ATF7 NCOA1 MBD2 MEF2D ATP5PD KCTD2 JPT1 TMEM94 TRIM80P PIR52580
GH17J075083 Enhancer 1.4 Ensembl ENCODE dbSUPER 0.4 +9.9 9871 0.9 FOXA2 MLX ARID4B SIN3A FEZF1 ZNF48 ETS1 TCF12 SLC30A9 NFKBIZ SLC16A5 MRPL58 TRIM80P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TRIM80P on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRIM80P Gene

Genomic Locations for TRIM80P Gene
chr17:75,074,306-75,079,549
(GRCh38/hg38)
Size:
5,244 bases
Orientation:
Plus strand
chr17:73,070,401-73,075,644
(GRCh37/hg19)
Size:
5,244 bases
Orientation:
Plus strand

Genomic View for TRIM80P Gene

Genes around TRIM80P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRIM80P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRIM80P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRIM80P Gene

Function for TRIM80P Gene

Phenotypes From GWAS Catalog for TRIM80P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRIM80P Gene

Localization for TRIM80P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRIM80P Gene

Pathways & Interactions for TRIM80P Gene

SuperPathways for TRIM80P Gene

No Data Available

Interacting Proteins for TRIM80P Gene

Gene Ontology (GO) - Biological Process for TRIM80P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRIM80P Gene

Drugs & Compounds for TRIM80P Gene

No Compound Related Data Available

Transcripts for TRIM80P Gene

mRNA/cDNA for TRIM80P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRIM80P Gene

No ASD Table

Relevant External Links for TRIM80P Gene

GeneLoc Exon Structure for
TRIM80P
ECgene alternative splicing isoforms for
TRIM80P

Expression for TRIM80P Gene

NURSA nuclear receptor signaling pathways regulating expression of TRIM80P Gene:

TRIM80P
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRIM80P Gene

Orthologs for TRIM80P Gene

Evolution for TRIM80P Gene

ENSEMBL:
Gene Tree for TRIM80P (if available)
TreeFam:
Gene Tree for TRIM80P (if available)

No data available for Orthologs for TRIM80P Gene

Paralogs for TRIM80P Gene

No data available for Paralogs for TRIM80P Gene

Variants for TRIM80P Gene

Additional Variant Information for TRIM80P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRIM80P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRIM80P Gene

Disorders for TRIM80P Gene

No disorders were found for TRIM80P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRIM80P Gene

Publications for TRIM80P Gene

No publications were found for TRIM80P Gene.

Products for TRIM80P Gene

Sources for TRIM80P Gene

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