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Aliases for TRIM45 Gene

Aliases for TRIM45 Gene

  • Tripartite Motif Containing 45 2 3 5
  • RNF99 3 4
  • Tripartite Motif-Containing Protein 45 3
  • Tripartite Motif-Containing 45 2
  • Ring Finger Protein 99 3
  • RING Finger Protein 99 4

External Ids for TRIM45 Gene

Previous GeneCards Identifiers for TRIM45 Gene

  • GC01M116493
  • GC01M116801
  • GC01M117001
  • GC01M117365
  • GC01M117654
  • GC01M115511

Summaries for TRIM45 Gene

Entrez Gene Summary for TRIM45 Gene

  • This gene encodes a member of the tripartite motif family. The encoded protein may function as a transcriptional repressor of the mitogen-activated protein kinase pathway. Alternatively spliced transcript variants have been described.[provided by RefSeq, Mar 2009]

GeneCards Summary for TRIM45 Gene

TRIM45 (Tripartite Motif Containing 45) is a Protein Coding gene. Among its related pathways are Cytokine Signaling in Immune system and Innate Immune System. An important paralog of this gene is TRIM71.

UniProtKB/Swiss-Prot for TRIM45 Gene

  • May act as a transcriptional repressor in mitogen-activated protein kinase signaling pathway.

Gene Wiki entry for TRIM45 Gene

Additional gene information for TRIM45 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRIM45 Gene

Genomics for TRIM45 Gene

GeneHancer (GH) Regulatory Elements for TRIM45 Gene

Promoters and enhancers for TRIM45 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I117120 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 560.7 +0.5 459 2.9 PKNOX1 SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF143 FOS SP3 CEBPZ TRIM45 WDR3 ATP1A1-AS1 VTCN1 ENSG00000212266 TTF2 PIR35685
GH01I116371 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 9.9 +745.7 745730 9.9 HDGF HNRNPUL1 CLOCK FOXA2 SMAD1 ARNT ZFP64 ARID4B SIN3A ZNF2 ATP1A1 ATP1A1-AS1 CD58 TRIM45 NAP1L4P1 SLC22A15 GC01P116388 GC01P116389
GH01I116569 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 9.9 +551.9 551858 3.1 HDGF PKNOX1 SMAD1 SIN3A DMAP1 YY1 POLR2B ZNF766 E2F8 ZNF207 CD58 MAN1A2 TRIM45 ATP1A1-AS1 ATP1A1 IGSF3 CD101 TTF2 MIR548AC
GH01I116877 Enhancer 1.5 FANTOM5 Ensembl ENCODE 10 +243.9 243880 3.1 HDGF PKNOX1 ARNT SIN3A YBX1 FEZF1 ZNF2 ZNF213 ZNF302 ZNF416 MAN1A2 ATP1A1-AS1 PTGFRN CD2 CD101 TRIM45 TTF2 LOC105378927 FTH1P22
GH01I117339 Enhancer 1.2 Ensembl ENCODE 10.1 -217.5 -217499 1.4 HDGF PKNOX1 FEZF1 ZNF2 YY1 ZNF766 CBX5 KLF13 SP3 REST MAN1A2 ENSG00000271427 TRIM45 CD58 GC01M117313 LINC01525
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TRIM45 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the TRIM45 gene promoter:

Genomic Locations for TRIM45 Gene

Genomic Locations for TRIM45 Gene
chr1:117,111,055-117,122,587
(GRCh38/hg38)
Size:
11,533 bases
Orientation:
Minus strand
chr1:117,653,677-117,665,209
(GRCh37/hg19)

Genomic View for TRIM45 Gene

Genes around TRIM45 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRIM45 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRIM45 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRIM45 Gene

Proteins for TRIM45 Gene

  • Protein details for TRIM45 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H8W5-TRI45_HUMAN
    Recommended name:
    Tripartite motif-containing protein 45
    Protein Accession:
    Q9H8W5
    Secondary Accessions:
    • Q53GN0
    • Q5T2K4
    • Q5T2K5
    • Q8IYV6

    Protein attributes for TRIM45 Gene

    Size:
    580 amino acids
    Molecular mass:
    64359 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for TRIM45 Gene

    Alternative splice isoforms for TRIM45 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TRIM45 Gene

Post-translational modifications for TRIM45 Gene

Other Protein References for TRIM45 Gene

No data available for DME Specific Peptides for TRIM45 Gene

Domains & Families for TRIM45 Gene

Gene Families for TRIM45 Gene

Suggested Antigen Peptide Sequences for TRIM45 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9H8W5

UniProtKB/Swiss-Prot:

TRI45_HUMAN :
  • Belongs to the TRIM/RBCC family.
Family:
  • Belongs to the TRIM/RBCC family.
genes like me logo Genes that share domains with TRIM45: view

Function for TRIM45 Gene

Molecular function for TRIM45 Gene

UniProtKB/Swiss-Prot Function:
May act as a transcriptional repressor in mitogen-activated protein kinase signaling pathway.

Gene Ontology (GO) - Molecular Function for TRIM45 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008270 zinc ion binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with TRIM45: view
genes like me logo Genes that share phenotypes with TRIM45: view

Animal Models for TRIM45 Gene

MGI Knock Outs for TRIM45:

Clone Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for TRIM45 Gene

Localization for TRIM45 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TRIM45 Gene

Cytoplasm. Nucleus.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TRIM45 gene
Compartment Confidence
nucleus 5
cytosol 5
extracellular 4

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cytokinetic bridge (3)
  • Cytosol (3)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for TRIM45 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
GO:0005654 nucleoplasm IDA --
GO:0005737 cytoplasm IEA --
GO:0005829 cytosol IDA --
GO:0045171 intercellular bridge IDA --
genes like me logo Genes that share ontologies with TRIM45: view

Pathways & Interactions for TRIM45 Gene

genes like me logo Genes that share pathways with TRIM45: view

Pathways by source for TRIM45 Gene

Gene Ontology (GO) - Biological Process for TRIM45 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0060348 bone development IEA --
genes like me logo Genes that share ontologies with TRIM45: view

No data available for SIGNOR curated interactions for TRIM45 Gene

Drugs & Compounds for TRIM45 Gene

No Compound Related Data Available

Transcripts for TRIM45 Gene

Unigene Clusters for TRIM45 Gene

Tripartite motif containing 45:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRIM45 Gene

ExUns: 1 ^ 2 ^ 3a · 3b ^ 4a · 4b · 4c · 4d ^ 5 ^ 6 ^ 7 ^ 8a · 8b · 8c
SP1: -
SP2:
SP3: - - - - - - -
SP4: -
SP5: -

Relevant External Links for TRIM45 Gene

GeneLoc Exon Structure for
TRIM45
ECgene alternative splicing isoforms for
TRIM45

Expression for TRIM45 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TRIM45 Gene

Protein differential expression in normal tissues from HIPED for TRIM45 Gene

This gene is overexpressed in Platelet (19.4), Liver, secretome (17.9), and Urine (9.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for TRIM45 Gene



NURSA nuclear receptor signaling pathways regulating expression of TRIM45 Gene:

TRIM45

SOURCE GeneReport for Unigene cluster for TRIM45 Gene:

Hs.301526

mRNA Expression by UniProt/SwissProt for TRIM45 Gene:

Q9H8W5-TRI45_HUMAN
Tissue specificity: Expressed in skeletal muscle, brain, heart and pancreas.

Evidence on tissue expression from TISSUES for TRIM45 Gene

  • Kidney(4.1)
genes like me logo Genes that share expression patterns with TRIM45: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRIM45 Gene

Orthologs for TRIM45 Gene

This gene was present in the common ancestor of animals.

Orthologs for TRIM45 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TRIM45 33 34
  • 99.08 (n)
dog
(Canis familiaris)
Mammalia TRIM45 33 34
  • 89.02 (n)
cow
(Bos Taurus)
Mammalia TRIM45 33 34
  • 87.53 (n)
mouse
(Mus musculus)
Mammalia Trim45 33 16 34
  • 84.6 (n)
rat
(Rattus norvegicus)
Mammalia Trim45 33
  • 84.28 (n)
oppossum
(Monodelphis domestica)
Mammalia TRIM45 34
  • 58 (a)
OneToOne
chicken
(Gallus gallus)
Aves TRIM45 33 34
  • 69.86 (n)
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.9574 33
African clawed frog
(Xenopus laevis)
Amphibia Xl.14978 33
zebrafish
(Danio rerio)
Actinopterygii trim45 33 34
  • 57.01 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG8419 33 34
  • 45.07 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 10 (a)
OneToMany
Species where no ortholog for TRIM45 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TRIM45 Gene

ENSEMBL:
Gene Tree for TRIM45 (if available)
TreeFam:
Gene Tree for TRIM45 (if available)

Paralogs for TRIM45 Gene

Paralogs for TRIM45 Gene

genes like me logo Genes that share paralogs with TRIM45: view

Variants for TRIM45 Gene

Sequence variations from dbSNP and Humsavar for TRIM45 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000093782 -- 117,112,350(-) A/G coding_sequence_variant, non_coding_transcript_variant, synonymous_variant
rs1000108353 -- 117,112,883(-) ACACA/ACA intron_variant
rs1000399040 -- 117,119,785(-) A/T intron_variant
rs1000941464 -- 117,107,786(-) C/T 3_prime_UTR_variant, genic_downstream_transcript_variant
rs1001082581 -- 117,114,281(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for TRIM45 Gene

Variant ID Type Subtype PubMed ID
nsv1009706 CNV gain 25217958

Variation tolerance for TRIM45 Gene

Residual Variation Intolerance Score: 89.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 11.92; 93.58% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for TRIM45 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRIM45

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TRIM45 Gene

Disorders for TRIM45 Gene

Additional Disease Information for TRIM45

No disorders were found for TRIM45 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TRIM45 Gene

Publications for TRIM45 Gene

  1. TRIM45, a novel human RBCC/TRIM protein, inhibits transcriptional activities of ElK-1 and AP-1. (PMID: 15351693) Wang Y … Liu M (Biochemical and biophysical research communications 2004) 2 3 4 58
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 3 4 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  5. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 58

Products for TRIM45 Gene

Sources for TRIM45 Gene

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