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Aliases for TRIM36-IT1 Gene

Subcategory (RNA class) for TRIM36-IT1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for TRIM36-IT1 Gene

  • TRIM36 Intronic Transcript 1 2 3 5
  • TRIM36 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for TRIM36-IT1 Gene

ORGUL Members for TRIM36-IT1 Gene

Previous GeneCards Identifiers for TRIM36-IT1 Gene

  • GC00U933942
  • GC05M114485

Summaries for TRIM36-IT1 Gene

GeneCards Summary for TRIM36-IT1 Gene

TRIM36-IT1 (TRIM36 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for TRIM36-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRIM36-IT1 Gene

Genomics for TRIM36-IT1 Gene

GeneHancer (GH) Regulatory Elements for TRIM36-IT1 Gene

Promoters and enhancers for TRIM36-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I115149 Promoter 0.5 EPDnew 550.8 +0.0 20 0.1 TRIM36-IT1 TRIM36 ENSG00000250242
GH05I115169 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 0.3 -20.6 -20600 2.5 PKNOX1 CLOCK ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF213 TRIM36 CCDC112 TRIM36-IT1
GH05I115180 Promoter 1.6 EPDnew Ensembl 0.3 -30.6 -30557 0.4 SUZ12 MAX BMI1 ZNF324 ZNF335 ZNF213 POLR2A PATZ1 ZNF600 ZBTB20 TRIM36 TRIM36-IT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TRIM36-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRIM36-IT1 Gene

Genomic Locations for TRIM36-IT1 Gene
chr5:115,148,764-115,149,644
(GRCh38/hg38)
Size:
881 bases
Orientation:
Minus strand
chr5:114,484,461-114,485,341
(GRCh37/hg19)

Genomic View for TRIM36-IT1 Gene

Genes around TRIM36-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRIM36-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRIM36-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for TRIM36-IT1 Gene

Proteins for TRIM36-IT1 Gene

Post-translational modifications for TRIM36-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRIM36-IT1 Gene

Domains & Families for TRIM36-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRIM36-IT1 Gene

Function for TRIM36-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRIM36-IT1 Gene

Localization for TRIM36-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRIM36-IT1 Gene

Pathways & Interactions for TRIM36-IT1 Gene

SuperPathways for TRIM36-IT1 Gene

No Data Available

Interacting Proteins for TRIM36-IT1 Gene

Gene Ontology (GO) - Biological Process for TRIM36-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRIM36-IT1 Gene

Drugs & Compounds for TRIM36-IT1 Gene

No Compound Related Data Available

Transcripts for TRIM36-IT1 Gene

mRNA/cDNA for TRIM36-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRIM36-IT1 Gene

No ASD Table

Relevant External Links for TRIM36-IT1 Gene

GeneLoc Exon Structure for
TRIM36-IT1
ECgene alternative splicing isoforms for
TRIM36-IT1

Expression for TRIM36-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TRIM36-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for TRIM36-IT1 Gene

This gene is overexpressed in Testis (x8.2), Colon - Transverse (x8.2), Brain - Cortex (x6.1), Pituitary (x5.3), and Small Intestine - Terminal Ileum (x4.6).
genes like me logo Genes that share expression patterns with TRIM36-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRIM36-IT1 Gene

Orthologs for TRIM36-IT1 Gene

Evolution for TRIM36-IT1 Gene

ENSEMBL:
Gene Tree for TRIM36-IT1 (if available)
TreeFam:
Gene Tree for TRIM36-IT1 (if available)

No data available for Orthologs for TRIM36-IT1 Gene

Paralogs for TRIM36-IT1 Gene

No data available for Paralogs for TRIM36-IT1 Gene

Variants for TRIM36-IT1 Gene

Additional Variant Information for TRIM36-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRIM36-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRIM36-IT1 Gene

Disorders for TRIM36-IT1 Gene

No disorders were found for TRIM36-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRIM36-IT1 Gene

Publications for TRIM36-IT1 Gene

No publications were found for TRIM36-IT1 Gene.

Products for TRIM36-IT1 Gene

Sources for TRIM36-IT1 Gene

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