Aliases for TRIM31-AS1 Gene

Subcategory (RNA class) for TRIM31-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for TRIM31-AS1 Gene

  • TRIM31 Antisense RNA 1 2 3 5
  • TRIM31 Antisense RNA 1 (Non-Protein Coding) 2 3
  • TRIM31-AS1 2 5
  • XXbac-BPG250I8.13 3
  • NONHSAG045867.2 91
  • NONHSAG046211.2 91
  • NONHSAG046052.2 91
  • NONHSAG043397.2 91
  • NONHSAG046385.2 91
  • NONHSAG045674.2 91
  • NONHSAG046569.2 91
  • NONHSAG045566.2 91
  • HSALNG0049120 164
  • Lnc-TRIM40-5 165

External Ids for TRIM31-AS1 Gene

Previous GeneCards Identifiers for TRIM31-AS1 Gene

  • GC06P030076
  • GC06P030089
  • GC00U934725
  • GC06P030273
  • GC06P030305
  • GC06P032266
  • GC06P032438
  • GC06P032568
  • GC06P033225
  • GC06P030363
  • GC06P030515
  • GC06P030718
  • GC06P030882
  • GC06P031036
  • GC06P031189
  • GC06P031392
  • GC06P031994

Summaries for TRIM31-AS1 Gene

GeneCards Summary for TRIM31-AS1 Gene

TRIM31-AS1 (TRIM31 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for TRIM31-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TRIM31-AS1 Gene

Genomics for TRIM31-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TRIM31-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRIM31-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TRIM31-AS1 Gene

Genomic Locations for TRIM31-AS1 Gene
chr6:30,100,246-30,114,725
(GRCh38/hg38)
Size:
14,480 bases
Orientation:
Plus strand

Genomic View for TRIM31-AS1 Gene

Genes around TRIM31-AS1 on UCSC Golden Path with GeneCards custom track
TRIM31-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
TRIM31-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRIM31-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for TRIM31-AS1 Gene

Post-translational modifications for TRIM31-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRIM31-AS1 Gene

Domains & Families for TRIM31-AS1 Gene

Gene Families for TRIM31-AS1 Gene

genes like me logo Genes that share domains with TRIM31-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRIM31-AS1 Gene

Function for TRIM31-AS1 Gene

Phenotypes From GWAS Catalog for TRIM31-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRIM31-AS1 Gene

Localization for TRIM31-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRIM31-AS1 Gene

Pathways & Interactions for TRIM31-AS1 Gene

PathCards logo

SuperPathways for TRIM31-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRIM31-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TRIM31-AS1 Gene

Drugs & Compounds for TRIM31-AS1 Gene

No Compound Related Data Available

Transcripts for TRIM31-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TRIM31-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003AE208_9606 lncRNA 549 5

HGNC: 39761,

RefSeq: NR_126470,

Ensembl: ENST00000412479 (view in UCSC) , ENST00000413394 (view in UCSC) , ENST00000417739 (view in UCSC) , ENST00000440874 (view in UCSC) , ENST00000446245 (view in UCSC) ,

LncBook: HSALNT0103776, HSALNT0103777, HSALNT0103778, HSALNT0103779, HSALNT0103780,

NONCODE: NONHSAT108601.2, NONHSAT116578.2, NONHSAT116932.2, NONHSAT117283.2, NONHSAT117620.2,

URS00008C29D7_9606 lncRNA 548 3

Ensembl: ENST00000450887 (view in UCSC) ,

LncBook: HSALNT0103782,

NONCODE: NONHSAT118295.2,

URS00008C289A_9606 lncRNA 276 3

Ensembl: ENST00000433585 (view in UCSC) ,

LncBook: HSALNT0103791,

NONCODE: NONHSAT116366.2,

URS0000D57684_9606 lncRNA 224 2

LncBook: HSALNT0103750,

LNCipedia: lnc-TRIM40-5:1,

URS00009B83C0_9606 lncRNA 607 1

NONCODE: NONHSAT207067.1,

TRIM31-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for TRIM31-AS1 Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRIM31-AS1 Gene

No ASD Table

Relevant External Links for TRIM31-AS1 Gene

GeneLoc Exon Structure for
TRIM31-AS1

Expression for TRIM31-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TRIM31-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for TRIM31-AS1

genes like me logo Genes that share expression patterns with TRIM31-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRIM31-AS1 Gene

Orthologs for TRIM31-AS1 Gene

Evolution for TRIM31-AS1 Gene

ENSEMBL:
Gene Tree for TRIM31-AS1 (if available)
TreeFam:
Gene Tree for TRIM31-AS1 (if available)

No data available for Orthologs for TRIM31-AS1 Gene

Paralogs for TRIM31-AS1 Gene

No data available for Paralogs for TRIM31-AS1 Gene

Variants for TRIM31-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for TRIM31-AS1 Gene

SNP ID Clinical significance and condition Chr 06 pos Variation AA Info Type
712613 Likely Benign: not provided 30,110,485(+) T/C MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
768071 Benign: not provided 30,110,458(+) T/C MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
776117 Benign: not provided 30,110,488(+) A/G MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
776118 Benign: not provided 30,112,427(+) T/C MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
776119 Benign: not provided 30,112,503(+) C/T MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT

Additional dbSNP identifiers (rs#s) for TRIM31-AS1 Gene

Additional Variant Information for TRIM31-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRIM31-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRIM31-AS1 Gene

Disorders for TRIM31-AS1 Gene

Additional Disease Information for TRIM31-AS1

No disorders were found for TRIM31-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TRIM31-AS1 Gene

Publications for TRIM31-AS1 Gene

No publications were found for TRIM31-AS1 Gene.

Products for TRIM31-AS1 Gene

Sources for TRIM31-AS1 Gene