TRI-TAT3-1 Gene (RNA Gene)

TRNA-Ile (Anticodon TAT) 3-1

GC06P028537
GIFtS:
6
See more...

Aliases for TRI-TAT3-1 Gene

Subcategory (RNA class) for TRI-TAT3-1 Gene

tRNA

Number of RNA Genes sources:

3 / 17

Aliases for TRI-TAT3-1 Gene

  • TRNA-Ile (Anticodon TAT) 3-1 2 3
  • Transfer RNA Isoleucine 21 (Anticodon UAU) 2 3
  • Transfer RNA-Ile (TAT) 3-1 2 3
  • TRNA-Ile-TAT-3-1 2 162
  • TRNA-Ile (TAT) 3-1 3
  • TRI-TAT3-1 2
  • TRNAI21 3
  • RF00005 168

External Ids for TRI-TAT3-1 Gene

Previous HGNC Symbols for TRI-TAT3-1 Gene

  • TRNAI21

Summaries for TRI-TAT3-1 Gene

GeneCards Summary for TRI-TAT3-1 Gene

TRI-TAT3-1 (TRNA-Ile (Anticodon TAT) 3-1) is an RNA Gene, and is affiliated with the tRNA class.

Rfam classification for TRI-TAT3-1 Gene

Additional gene information for TRI-TAT3-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TRI-TAT3-1 Gene

Genomics for TRI-TAT3-1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for TRI-TAT3-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH06J028537 Promoter/Enhancer 1.1 ENCODE CraniofacialAtlas 600.7 -0.3 -275 1.4 BRCA1 TEAD4 ZNF24 HDAC1 PKNOX1 SCRT2 HMBOX1 HES1 ATF3 YY1 TRI-TAT3-1 GPX6 ZBED9
GH06J028532 Enhancer 0.7 Ensembl 0.4 -5.9 -5889 0.2 CTCF IKZF1 KDM1A REST HDAC1 SOX6 CTBP1 HDAC2 AFF1 FOSL1 GPX6 GPX5 TRI-TAT3-1 ZBED9
GH06J028531 Enhancer 0.7 ENCODE 0.4 -5.7 -5671 0.2 CTCF IKZF1 REST HDAC1 SOX6 CTBP1 HDAC2 AFF1 FOSL1 EHMT2 GPX6 GPX5 TRI-TAT3-1 ZBED9
GH06J028530 Enhancer 0.3 Ensembl 0.4 -6.6 -6589 0.4 ZNF652 ZNF603P GPX6 GPX5 TRI-TAT3-1 ZBED9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRI-TAT3-1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TRI-TAT3-1 Gene

Genomic Locations for TRI-TAT3-1 Gene
chr6:28,537,590-28,537,683
(GRCh38/hg38)
Size:
94 bases
Orientation:
Plus strand
chr6:28,505,367-28,505,460
(GRCh37/hg19)
Size:
94 bases
Orientation:
Plus strand

Genomic View for TRI-TAT3-1 Gene

Genes around TRI-TAT3-1 on UCSC Golden Path with GeneCards custom track
TRI-TAT3-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
TRI-TAT3-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRI-TAT3-1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for TRI-TAT3-1 Gene

Proteins for TRI-TAT3-1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for TRI-TAT3-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRI-TAT3-1 Gene

Domains & Families for TRI-TAT3-1 Gene

Gene Families for TRI-TAT3-1 Gene

HGNC:
genes like me logo Genes that share domains with TRI-TAT3-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRI-TAT3-1 Gene

Function for TRI-TAT3-1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRI-TAT3-1 Gene

Localization for TRI-TAT3-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRI-TAT3-1 Gene

Pathways & Interactions for TRI-TAT3-1 Gene

PathCards logo

SuperPathways for TRI-TAT3-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRI-TAT3-1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TRI-TAT3-1 Gene

Drugs & Compounds for TRI-TAT3-1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for TRI-TAT3-1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TRI-TAT3-1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000758A62_9606 tRNA 74 3

HGNC: 34916,

GtRNAdb: tRNA-Ile-TAT-3-1:CM000668.1:28505367-28505460, tRNA-Ile-TAT-3-1:CM000668.2:28537590-28537683,

ENA: HG983867.1:1..94:tRNA,

URS0000663392_9606 tRNA 94 1

Rfam: RF00005,

TRI-TAT3-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRI-TAT3-1 Gene

No ASD Table

Relevant External Links for TRI-TAT3-1 Gene

GeneLoc Exon Structure for
TRI-TAT3-1

No data available for mRNA/cDNA for TRI-TAT3-1 Gene

Expression for TRI-TAT3-1 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRI-TAT3-1 Gene

Orthologs for TRI-TAT3-1 Gene

No data available for Orthologs and Evolution for TRI-TAT3-1 Gene

Paralogs for TRI-TAT3-1 Gene

No data available for Paralogs for TRI-TAT3-1 Gene

Variants for TRI-TAT3-1 Gene

Additional Variant Information for TRI-TAT3-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRI-TAT3-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRI-TAT3-1 Gene

Disorders for TRI-TAT3-1 Gene

No disorders were found for TRI-TAT3-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRI-TAT3-1 Gene

Publications for TRI-TAT3-1 Gene

No publications were found for TRI-TAT3-1 Gene.

No data available for Mastermind for TRI-TAT3-1 Gene

Products for TRI-TAT3-1 Gene

Sources for TRI-TAT3-1 Gene