Aliases for TRHDE-AS1 Gene

Subcategory (RNA class) for TRHDE-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for TRHDE-AS1 Gene

  • TRHDE Antisense RNA 1 2 3 5
  • TRHDE-AS1 2 5 165
  • TRHDE Antisense RNA 1 (Non-Protein Coding) 2 3
  • NONHSAG011686.2 91
  • HSALNG0092387 164

External Ids for TRHDE-AS1 Gene

Previous GeneCards Identifiers for TRHDE-AS1 Gene

  • GC12M072648

Summaries for TRHDE-AS1 Gene

GeneCards Summary for TRHDE-AS1 Gene

TRHDE-AS1 (TRHDE Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for TRHDE-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TRHDE-AS1 Gene

Genomics for TRHDE-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TRHDE-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J072269 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 9.5 +3.2 3152 8.8 ZSCAN4 POLR2A EZH2 CEBPA CTCF CEBPB RAD21 FOS ZBTB17 JUND TRHDE TRHDE-AS1 lnc-TPH2-3
GH12J072293 Enhancer 0.9 FANTOM5 Ensembl ENCODE 6 -18.9 -18906 4.3 JUND CEBPB NFE2 FOS BHLHE40 MAFK NFE2L2 TRHDE TPH2 TRHDE-AS1 lnc-ZFC3H1-13
GH12J072346 Enhancer 0.8 Ensembl ENCODE 6.1 -70.2 -70177 1.3 CTCF FOXA1 REST RAD21 SMARCA5 NFE2 ZNF444 SMC3 YY1 GATA3 TRHDE-AS1 lnc-ZFC3H1-13 TRHDE
GH12J072279 Enhancer 0.7 Ensembl ENCODE dbSUPER 0.7 -3.9 -3850 2.4 FOS BHLHE40 TRHDE-AS1 lnc-ZFC3H1-13 TRHDE
GH12J072282 Enhancer 0.4 Ensembl 0.4 -5.7 -5747 0.2 CTCF RAD21 ZNF143 TRHDE-AS1 lnc-ZFC3H1-13 TRHDE
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRHDE-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TRHDE-AS1 Gene

Genomic Locations for TRHDE-AS1 Gene
chr12:72,240,843-72,276,954
(GRCh38/hg38)
Size:
36,112 bases
Orientation:
Minus strand
chr12:72,647,287-72,668,687
(GRCh37/hg19)
Size:
21,401 bases
Orientation:
Minus strand

Genomic View for TRHDE-AS1 Gene

Genes around TRHDE-AS1 on UCSC Golden Path with GeneCards custom track
TRHDE-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
TRHDE-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRHDE-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRHDE-AS1 Gene

Proteins for TRHDE-AS1 Gene

Post-translational modifications for TRHDE-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRHDE-AS1 Gene

Domains & Families for TRHDE-AS1 Gene

Gene Families for TRHDE-AS1 Gene

genes like me logo Genes that share domains with TRHDE-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRHDE-AS1 Gene

Function for TRHDE-AS1 Gene

Phenotypes From GWAS Catalog for TRHDE-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRHDE-AS1 Gene

Localization for TRHDE-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRHDE-AS1 Gene

Pathways & Interactions for TRHDE-AS1 Gene

PathCards logo

SuperPathways for TRHDE-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRHDE-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TRHDE-AS1 Gene

Drugs & Compounds for TRHDE-AS1 Gene

No Compound Related Data Available

Transcripts for TRHDE-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TRHDE-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075C884_9606 lncRNA 3955 3

RefSeq: NR_026837,

LNCipedia: TRHDE-AS1:5,

NONCODE: NONHSAT029458.2,

URS000075E8D2_9606 lncRNA 3160 2

HGNC: 27471,

RefSeq: NR_026836,

URS0000EED94F_9606 lncRNA 7270 1

Ensembl: ENST00000426250 (view in UCSC) ,

URS0000EEFE70_9606 lncRNA 6419 1

Ensembl: ENST00000668786 (view in UCSC) ,

URS0000EEE42A_9606 lncRNA 5841 1

Ensembl: ENST00000667465 (view in UCSC) ,

TRHDE-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for TRHDE-AS1 Gene

1 REFSEQ mRNAs :
9 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for TRHDE-AS1

Alternative Splicing Database (ASD) splice patterns (SP) for TRHDE-AS1 Gene

No ASD Table

Relevant External Links for TRHDE-AS1 Gene

GeneLoc Exon Structure for
TRHDE-AS1

Expression for TRHDE-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TRHDE-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TRHDE-AS1 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x7.0), Brain - Cerebellum (x6.4), and Adipose - Subcutaneous (x5.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for TRHDE-AS1

SOURCE GeneReport for Unigene cluster for TRHDE-AS1 Gene:

Hs.363603
genes like me logo Genes that share expression patterns with TRHDE-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRHDE-AS1 Gene

Orthologs for TRHDE-AS1 Gene

Evolution for TRHDE-AS1 Gene

ENSEMBL:
Gene Tree for TRHDE-AS1 (if available)
TreeFam:
Gene Tree for TRHDE-AS1 (if available)

No data available for Orthologs for TRHDE-AS1 Gene

Paralogs for TRHDE-AS1 Gene

No data available for Paralogs for TRHDE-AS1 Gene

Variants for TRHDE-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for TRHDE-AS1 Gene

SNP ID Clinical significance and condition Chr 12 pos Variation AA Info Type
784247 Benign: not provided 72,273,276(-) G/A NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT

Additional dbSNP identifiers (rs#s) for TRHDE-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for TRHDE-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2422452 CNV duplication 17116639
esv2662698 CNV deletion 23128226
esv3629926 CNV loss 21293372
nsv1044083 CNV gain 25217958
nsv469465 CNV gain 19166990
nsv559362 CNV loss 21841781
nsv559363 CNV gain 21841781
nsv770 CNV deletion 18451855
nsv826433 CNV loss 20364138
nsv832452 CNV gain 17160897

Additional Variant Information for TRHDE-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRHDE-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TRHDE-AS1 Gene

Disorders for TRHDE-AS1 Gene

No disorders were found for TRHDE-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TRHDE-AS1 Gene

Publications for TRHDE-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for TRHDE-AS1 Gene

Sources for TRHDE-AS1 Gene