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Aliases for TRHDE-AS1 Gene

Subcategory (RNA class) for TRHDE-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for TRHDE-AS1 Gene

  • TRHDE Antisense RNA 1 2 3 5
  • TRHDE Antisense RNA 1 (Non-Protein Coding) 2 3

External Ids for TRHDE-AS1 Gene

Previous GeneCards Identifiers for TRHDE-AS1 Gene

  • GC12M072648

Summaries for TRHDE-AS1 Gene

GeneCards Summary for TRHDE-AS1 Gene

TRHDE-AS1 (TRHDE Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TRHDE-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRHDE-AS1 Gene

Genomics for TRHDE-AS1 Gene

GeneHancer (GH) Regulatory Elements for TRHDE-AS1 Gene

Promoters and enhancers for TRHDE-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J072269 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 659.6 +1.1 1067 8.7 CTCF MXI1 PKNOX1 SUZ12 ZSCAN4 SIN3A POLR2A FOS EZH2 L3MBTL2 TRHDE-AS1 TRHDE GC12P072258
GH12J072293 Enhancer 0.8 FANTOM5 ENCODE 5.9 -21.0 -20953 4.3 JUND NFE2 FOS MAFK NFE2L2 TRHDE TPH2 TRHDE-AS1 ENSG00000257287
GH12J072279 Enhancer 0.5 ENCODE dbSUPER 0.4 -5.7 -5689 2 FOS TRHDE-AS1 ENSG00000257287 TRHDE
GH12J072307 Enhancer 0.4 FANTOM5 0.3 -32.4 -32410 0.4 ATF7 SETDB1 TPH2 TRHDE-AS1 ENSG00000257287 TRHDE
GH12J072346 Enhancer 0.6 ENCODE 0.2 -71.6 -71639 0.2 SMARCA5 CTCF ZNF654 MAX REST RAD21 GATA3 SMC3 NFE2 ZNF444 TRHDE-AS1 ENSG00000257287 TRHDE
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRHDE-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRHDE-AS1 Gene

Genomic Locations for TRHDE-AS1 Gene
chr12:72,253,507-72,274,907
(GRCh38/hg38)
Size:
21,401 bases
Orientation:
Minus strand
chr12:72,647,287-72,668,687
(GRCh37/hg19)
Size:
21,401 bases
Orientation:
Minus strand

Genomic View for TRHDE-AS1 Gene

Genes around TRHDE-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRHDE-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRHDE-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRHDE-AS1 Gene

Proteins for TRHDE-AS1 Gene

Post-translational modifications for TRHDE-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRHDE-AS1 Gene

Domains & Families for TRHDE-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRHDE-AS1 Gene

Function for TRHDE-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRHDE-AS1 Gene

Localization for TRHDE-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRHDE-AS1 Gene

Pathways & Interactions for TRHDE-AS1 Gene

SuperPathways for TRHDE-AS1 Gene

No Data Available

Interacting Proteins for TRHDE-AS1 Gene

Gene Ontology (GO) - Biological Process for TRHDE-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRHDE-AS1 Gene

Drugs & Compounds for TRHDE-AS1 Gene

No Compound Related Data Available

Transcripts for TRHDE-AS1 Gene

mRNA/cDNA for TRHDE-AS1 Gene

(1) REFSEQ mRNAs :
(7) Additional mRNA sequences :
(13) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(5) RNA Central transcripts :

Unigene Clusters for TRHDE-AS1 Gene

TRHDE antisense RNA 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for TRHDE-AS1

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRHDE-AS1 Gene

No ASD Table

Relevant External Links for TRHDE-AS1 Gene

GeneLoc Exon Structure for
TRHDE-AS1
ECgene alternative splicing isoforms for
TRHDE-AS1

Expression for TRHDE-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TRHDE-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TRHDE-AS1 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x7.0), Brain - Cerebellum (x6.4), and Adipose - Subcutaneous (x5.3).

SOURCE GeneReport for Unigene cluster for TRHDE-AS1 Gene:

Hs.363603
genes like me logo Genes that share expression patterns with TRHDE-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRHDE-AS1 Gene

Orthologs for TRHDE-AS1 Gene

Evolution for TRHDE-AS1 Gene

ENSEMBL:
Gene Tree for TRHDE-AS1 (if available)
TreeFam:
Gene Tree for TRHDE-AS1 (if available)

No data available for Orthologs for TRHDE-AS1 Gene

Paralogs for TRHDE-AS1 Gene

No data available for Paralogs for TRHDE-AS1 Gene

Variants for TRHDE-AS1 Gene

Sequence variations from dbSNP and Humsavar for TRHDE-AS1 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000112346 -- 72,256,761(-) C/T genic_downstream_transcript_variant, intron_variant
rs1000238280 -- 72,263,570(-) C/T intron_variant, non_coding_transcript_variant
rs1000466903 -- 72,272,074(-) G/T non_coding_transcript_variant
rs1000571696 -- 72,261,977(-) A/C genic_downstream_transcript_variant, intron_variant
rs1000623995 -- 72,262,244(-) T/C downstream_transcript_variant, genic_downstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for TRHDE-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2422452 CNV duplication 17116639
esv2662698 CNV deletion 23128226
esv3629926 CNV loss 21293372
nsv1044083 CNV gain 25217958
nsv469465 CNV gain 19166990
nsv559362 CNV loss 21841781
nsv559363 CNV gain 21841781
nsv770 CNV deletion 18451855
nsv826433 CNV loss 20364138
nsv832452 CNV gain 17160897

Additional Variant Information for TRHDE-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRHDE-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TRHDE-AS1 Gene

Disorders for TRHDE-AS1 Gene

Additional Disease Information for TRHDE-AS1

No disorders were found for TRHDE-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TRHDE-AS1 Gene

Publications for TRHDE-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for TRHDE-AS1 Gene

Sources for TRHDE-AS1 Gene

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