Aliases for TRGV5P Gene

Aliases for TRGV5P Gene

  • T Cell Receptor Gamma Variable 5P (Pseudogene) 2 3 5
  • T-Cell Receptor, Gamma, Variable Region V5P (Pseudogene) 2 3
  • TCRGV5P 2 3
  • T Cell Receptor Gamma Variable 5 Pseudogene 3
  • V1S5P 3

External Ids for TRGV5P Gene

Previous HGNC Symbols for TRGV5P Gene

  • TCRGV5P

Previous GeneCards Identifiers for TRGV5P Gene

  • GC07U990110
  • GC07M038091
  • GC07M038125
  • GC07M038157
  • GC07M038352
  • GC07M038385
  • GC07M038268
  • GC07M038386
  • GC07M038392
  • GC07M038429
  • GC07M038676
  • GC07M038904
  • GC07M039133
  • GC07M039364
  • GC07M038452
  • GC07M038460
  • GC07M038581
  • GC07M038593
  • GC07M038607
  • GC07M038474
  • GC07M038486
  • GC07M038499
  • GC07M038512
  • GC07M038524
  • GC07M038542
  • GC07M038555
  • GC07M038567

Summaries for TRGV5P Gene

GeneCards Summary for TRGV5P Gene

TRGV5P (T Cell Receptor Gamma Variable 5P (Pseudogene)) is a Pseudogene.

Additional gene information for TRGV5P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TRGV5P Gene

Genomics for TRGV5P Gene

GeneHancer (GH) Regulatory Elements for TRGV5P Gene

Promoters and enhancers for TRGV5P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J038340 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 534.9 +1.7 1698 8 CTCF NRF1 ZIC2 ZNF263 AFF1 TARDBP REST HES1 TOE1 MYC TRGV5P TRGV4 TRGV3 AMPH TRGV6 TRG TRG-AS1
GH07J038357 Promoter/Enhancer 1.2 Ensembl ENCODE dbSUPER 34.5 -15.4 -15396 6.6 CTCF REST CTBP1 TRIM22 ZNF263 NFXL1 MEF2B SMARCA5 ELF1 ZBTB48 TRGV3 lnc-STARD3NL-4 TRGV4 TRGV5P TRGV5 ENSG00000272908 AMPH TRGV7 TRGV2 lnc-STARD3NL-3
GH07J038366 Enhancer 0.9 ENCODE dbSUPER 34.2 -22.4 -22372 2.4 CTCF CTBP1 TRIM22 ZBTB17 ZNF263 NFXL1 NBN SMARCA5 ELF1 EBF1 TRG TRGV1 lnc-AMPH-1 lnc-STARD3NL-7 TRGV4 TRGV5P AMPH TRG-AS1
GH07J038348 Promoter/Enhancer 1.1 Ensembl ENCODE dbSUPER 20 -6.4 -6402 7 CTCF CTBP1 ZNF263 NFXL1 NBN ELF1 IKZF1 ZNF146 RAD21 MYC TRGV5 TRGV4 TRGV5P TRGV3 ENSG00000272908 lnc-AMPH-4 TRG TRG-AS1
GH07J038332 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 13.1 +10.2 10213 5.8 ZNF217 CTCF ZNF263 ZBTB11 AFF1 TARDBP REST TOE1 MYC RAD21 TRGV7 lnc-AMPH-5 ENSG00000272908 TRGV5 TRGV5P STARD3NL TRGV4 AMPH TRGV8 TRG-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRGV5P on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRGV5P Gene

Genomic Locations for TRGV5P Gene
chr7:38,345,030-38,345,499
(GRCh38/hg38)
Size:
470 bases
Orientation:
Minus strand
chr7:38,384,631-38,385,100
(GRCh37/hg19)
Size:
470 bases
Orientation:
Minus strand

Genomic View for TRGV5P Gene

Genes around TRGV5P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRGV5P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRGV5P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRGV5P Gene

Proteins for TRGV5P Gene

Post-translational modifications for TRGV5P Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRGV5P Gene

Domains & Families for TRGV5P Gene

Gene Families for TRGV5P Gene

genes like me logo Genes that share domains with TRGV5P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRGV5P Gene

Function for TRGV5P Gene

Phenotypes From GWAS Catalog for TRGV5P Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRGV5P Gene

Localization for TRGV5P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRGV5P Gene

Pathways & Interactions for TRGV5P Gene

PathCards logo

SuperPathways for TRGV5P Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for TRGV5P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TRGV5P Gene

Drugs & Compounds for TRGV5P Gene

No Compound Related Data Available

Transcripts for TRGV5P Gene

mRNA/cDNA for TRGV5P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TRGV5P Gene

No ASD Table

Relevant External Links for TRGV5P Gene

GeneLoc Exon Structure for
TRGV5P

Expression for TRGV5P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TRGV5P Gene

mRNA differential expression in normal tissues according to GTEx for TRGV5P Gene

This gene is overexpressed in Spleen (x8.3) and Whole Blood (x7.0).
genes like me logo Genes that share expression patterns with TRGV5P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRGV5P Gene

Orthologs for TRGV5P Gene

Evolution for TRGV5P Gene

ENSEMBL:
Gene Tree for TRGV5P (if available)
TreeFam:
Gene Tree for TRGV5P (if available)

No data available for Orthologs for TRGV5P Gene

Paralogs for TRGV5P Gene

No data available for Paralogs for TRGV5P Gene

Variants for TRGV5P Gene

Additional Variant Information for TRGV5P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRGV5P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRGV5P Gene

Disorders for TRGV5P Gene

No disorders were found for TRGV5P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRGV5P Gene

Publications for TRGV5P Gene

  1. Variable region genes in the human T-cell rearranging gamma (TRG) locus: V-J junction and homology with the mouse genes. (PMID: 2969332) Huck S … Lefranc MP (The EMBO journal 1988) 2 3 54
  2. Diversity and rearrangement of the human T cell rearranging gamma genes: nine germ-line variable genes belonging to two subgroups. (PMID: 2938743) LeFranc MP … Rabbitts TH (Cell 1986) 2 3 54
  3. The human T-cell receptor gamma (TRG) genes. (PMID: 2527426) Lefranc MP … Rabbitts TH (Trends in biochemical sciences 1989) 3 54

Products for TRGV5P Gene

Sources for TRGV5P Gene