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Aliases for TRGV5P Gene

Aliases for TRGV5P Gene

  • T Cell Receptor Gamma Variable 5P (Pseudogene) 2 3
  • T-Cell Receptor, Gamma, Variable Region V5P (Pseudogene) 2 3
  • TCRGV5P 2 3
  • T-Cell Receptor Gamma Variable 5P (Pseudogene) 5
  • T Cell Receptor Gamma Variable 5 Pseudogene 3
  • V1S5P 3

External Ids for TRGV5P Gene

Previous HGNC Symbols for TRGV5P Gene

  • TCRGV5P

Previous GeneCards Identifiers for TRGV5P Gene

  • GC07U990110
  • GC07M038091
  • GC07M038125
  • GC07M038157
  • GC07M038352
  • GC07M038385
  • GC07M038268
  • GC07M038386
  • GC07M038392
  • GC07M038429
  • GC07M038676
  • GC07M038904
  • GC07M039133
  • GC07M039364
  • GC07M038452
  • GC07M038460
  • GC07M038474
  • GC07M038486
  • GC07M038499
  • GC07M038512
  • GC07M038524

Summaries for TRGV5P Gene

GeneCards Summary for TRGV5P Gene

TRGV5P (T Cell Receptor Gamma Variable 5P (Pseudogene)) is a Pseudogene.

Additional gene information for TRGV5P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRGV5P Gene

Genomics for TRGV5P Gene

GeneHancer (GH) Regulatory Elements for TRGV5P Gene

Promoters and enhancers for TRGV5P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I038344 Enhancer 1.1 Ensembl ENCODE dbSUPER 585 0.0 -11 3 HDGF CTCF RB1 EBF1 RAD21 TCF12 ZNF366 ZBTB48 EGR1 ZNF143 TRGV5P TRGV4 TRGV3 AMPH TRGV6 TRG-AS1 TRGV5 TRG
GH07I038343 Enhancer 0.2 Ensembl 550.8 +1.8 1798 0.2 TRGV5P TRGV3 TRG-AS1 TRG
GH07I038366 Enhancer 1.2 Ensembl ENCODE dbSUPER 34.2 -23.2 -23245 4.2 HDGF RB1 NFXL1 YBX1 IRF4 RAD21 ZNF143 ATF7 BCLAF1 IKZF2 TRG TRGV1 TRGV4 TRGV5P TRGV3 AMPH TRG-AS1 RN7SL83P
GH07I038357 Enhancer 1.1 Ensembl ENCODE dbSUPER 34.6 -14.2 -14202 3.8 CTCF RB1 BACH1 NFXL1 CC2D1A CTBP1 ZBTB48 EGR1 ZNF143 ZNF444 TRGV3 GC07P038357 GC07P038360 TRGV4 TRGV5P TRGV5 AMPH TRGV7 TRG TRG-AS1
GH07I038362 Enhancer 1 Ensembl ENCODE dbSUPER 30.1 -17.7 -17696 2 SMARCA5 CTCF ZNF146 RB1 TRIM22 NFXL1 RAD21 ZNF366 POLR2A IKZF1 GC07P038364 TRGV2 TRGV4 TRGV5P TRGV3 GC07P038360 TRG TRG-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TRGV5P on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRGV5P Gene

Genomic Locations for TRGV5P Gene
chr7:38,345,030-38,345,499
(GRCh38/hg38)
Size:
470 bases
Orientation:
Minus strand
chr7:38,384,631-38,385,100
(GRCh37/hg19)

Genomic View for TRGV5P Gene

Genes around TRGV5P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRGV5P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRGV5P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRGV5P Gene

Proteins for TRGV5P Gene

Post-translational modifications for TRGV5P Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRGV5P Gene

Domains & Families for TRGV5P Gene

Gene Families for TRGV5P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRGV5P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRGV5P Gene

Function for TRGV5P Gene

Phenotypes From GWAS Catalog for TRGV5P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRGV5P Gene

Localization for TRGV5P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRGV5P Gene

Pathways & Interactions for TRGV5P Gene

SuperPathways for TRGV5P Gene

No Data Available

Interacting Proteins for TRGV5P Gene

Gene Ontology (GO) - Biological Process for TRGV5P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRGV5P Gene

Drugs & Compounds for TRGV5P Gene

No Compound Related Data Available

Transcripts for TRGV5P Gene

mRNA/cDNA for TRGV5P Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRGV5P Gene

No ASD Table

Relevant External Links for TRGV5P Gene

GeneLoc Exon Structure for
TRGV5P
ECgene alternative splicing isoforms for
TRGV5P

Expression for TRGV5P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TRGV5P Gene

mRNA differential expression in normal tissues according to GTEx for TRGV5P Gene

This gene is overexpressed in Spleen (x8.3) and Whole Blood (x7.0).

NURSA nuclear receptor signaling pathways regulating expression of TRGV5P Gene:

TRGV5P
genes like me logo Genes that share expression patterns with TRGV5P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRGV5P Gene

Orthologs for TRGV5P Gene

Evolution for TRGV5P Gene

ENSEMBL:
Gene Tree for TRGV5P (if available)
TreeFam:
Gene Tree for TRGV5P (if available)

No data available for Orthologs for TRGV5P Gene

Paralogs for TRGV5P Gene

No data available for Paralogs for TRGV5P Gene

Variants for TRGV5P Gene

Additional Variant Information for TRGV5P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRGV5P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRGV5P Gene

Disorders for TRGV5P Gene

No disorders were found for TRGV5P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRGV5P Gene

Publications for TRGV5P Gene

  1. Variable region genes in the human T-cell rearranging gamma (TRG) locus: V-J junction and homology with the mouse genes. (PMID: 2969332) Huck S … Lefranc MP (The EMBO journal 1988) 2 3 58
  2. Diversity and rearrangement of the human T cell rearranging gamma genes: nine germ-line variable genes belonging to two subgroups. (PMID: 2938743) LeFranc MP … Rabbitts TH (Cell 1986) 2 3 58
  3. The human T-cell receptor gamma (TRG) genes. (PMID: 2527426) Lefranc MP … Rabbitts TH (Trends in biochemical sciences 1989) 3 58

Products for TRGV5P Gene

Sources for TRGV5P Gene

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