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Aliases for TRG-AS1 Gene

Subcategory (RNA class) for TRG-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TRG-AS1 Gene

  • T Cell Receptor Gamma Locus Antisense RNA 1 2 3
  • TRG Antisense RNA 1 2 3
  • T-Cell Receptor Gamma Locus Antisense RNA 1 5
  • TCRGV 3

External Ids for TRG-AS1 Gene

Previous GeneCards Identifiers for TRG-AS1 Gene

  • GC07P038384

Summaries for TRG-AS1 Gene

GeneCards Summary for TRG-AS1 Gene

TRG-AS1 (T Cell Receptor Gamma Locus Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TRG-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRG-AS1 Gene

Genomics for TRG-AS1 Gene

GeneHancer (GH) Regulatory Elements for TRG-AS1 Gene

Promoters and enhancers for TRG-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I038340 Enhancer 1.3 Ensembl ENCODE dbSUPER 550.8 0.0 -6 3.3 HDGF PKNOX1 ATF1 ARNT POLR2B E2F8 ARID2 ATF7 ZNF263 NCOA1 TRG-AS1 TRGV6 TRGV4 TRGV3 TRGV5P TRG
GH07I038339 Enhancer 0.4 Ensembl 550.8 -2.0 -1976 0.4 PKNOX1 ZNF512 TRG-AS1 TRGV6 TRGV7 TRG
GH07I038344 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.8 +3.9 3933 3 HDGF CTCF RB1 EBF1 RAD21 TCF12 ZNF366 ZBTB48 EGR1 ZNF143 TRGV5P TRGV4 TRGV3 AMPH TRGV6 TRG-AS1 TRGV5 TRG
GH07I038357 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +18.1 18124 3.8 CTCF RB1 BACH1 NFXL1 CC2D1A CTBP1 ZBTB48 EGR1 ZNF143 ZNF444 TRGV3 GC07P038357 GC07P038360 TRGV4 TRGV5P TRGV5 AMPH TRGV7 TRG TRG-AS1
GH07I038348 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +8.9 8924 3.8 CTCF MAX ELF1 NFXL1 CTBP1 IKZF1 NBN ZNF143 MYC IKZF2 TRGV5 TRGV4 TRGV5P TRGV3 ENSG00000272908 TRG-AS1 TRG
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TRG-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRG-AS1 Gene

Genomic Locations for TRG-AS1 Gene
chr7:38,341,577-38,378,804
(GRCh38/hg38)
Size:
37,228 bases
Orientation:
Plus strand
chr7:38,381,178-38,418,238
(GRCh37/hg19)

Genomic View for TRG-AS1 Gene

Genes around TRG-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRG-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRG-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRG-AS1 Gene

Proteins for TRG-AS1 Gene

Post-translational modifications for TRG-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRG-AS1 Gene

Domains & Families for TRG-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRG-AS1 Gene

Function for TRG-AS1 Gene

Phenotypes From GWAS Catalog for TRG-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRG-AS1 Gene

Localization for TRG-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRG-AS1 Gene

Pathways & Interactions for TRG-AS1 Gene

SuperPathways for TRG-AS1 Gene

No Data Available

Interacting Proteins for TRG-AS1 Gene

Gene Ontology (GO) - Biological Process for TRG-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRG-AS1 Gene

Drugs & Compounds for TRG-AS1 Gene

No Compound Related Data Available

Transcripts for TRG-AS1 Gene

mRNA/cDNA for TRG-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TRG-AS1 Gene

No ASD Table

Relevant External Links for TRG-AS1 Gene

GeneLoc Exon Structure for
TRG-AS1
ECgene alternative splicing isoforms for
TRG-AS1

Expression for TRG-AS1 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRG-AS1 Gene

Orthologs for TRG-AS1 Gene

Evolution for TRG-AS1 Gene

ENSEMBL:
Gene Tree for TRG-AS1 (if available)
TreeFam:
Gene Tree for TRG-AS1 (if available)

No data available for Orthologs for TRG-AS1 Gene

Paralogs for TRG-AS1 Gene

No data available for Paralogs for TRG-AS1 Gene

Variants for TRG-AS1 Gene

Sequence variations from dbSNP and Humsavar for TRG-AS1 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000098033 -- 38,373,724(+) T/G intron_variant
rs1000175388 -- 38,363,794(+) C/A intron_variant
rs1000265234 -- 38,363,996(+) C/T intron_variant
rs1000337314 -- 38,374,570(+) T/C intron_variant
rs1000510791 -- 38,362,978(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for TRG-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1081e201 CNV deletion 23290073
dgv1082e201 CNV deletion 23290073
dgv1083e201 CNV deletion 23290073
dgv1101n67 CNV loss 20364138
dgv11282n54 CNV loss 21841781
dgv1194e199 CNV deletion 23128226
dgv1282e214 CNV loss 21293372
dgv1888e212 CNV gain 25503493
dgv1890e212 CNV loss 25503493
dgv1900e212 CNV gain 25503493
dgv1901e212 CNV loss 25503493
dgv6327n100 CNV loss 25217958
dgv6331n100 CNV gain 25217958
dgv6333n100 CNV loss 25217958
dgv6334n100 CNV gain 25217958
dgv6335n100 CNV loss 25217958
dgv6336n100 CNV loss 25217958
dgv89n68 CNV gain 17160897
esv1000823 CNV deletion 20482838
esv21728 CNV gain+loss 19812545
esv2665816 CNV deletion 23128226
esv2665852 CNV deletion 23128226
esv2666082 CNV deletion 23128226
esv2674978 CNV deletion 23128226
esv2675885 CNV deletion 23128226
esv2734277 CNV deletion 23290073
esv2734288 CNV deletion 23290073
esv2759524 CNV loss 17122850
esv33146 CNV gain+loss 17666407
esv34699 CNV loss 17911159
esv3541505 CNV deletion 23714750
esv3576324 CNV gain 25503493
esv3612871 CNV loss 21293372
esv3612872 CNV loss 21293372
esv3612873 CNV loss 21293372
esv3612874 CNV loss 21293372
esv3612875 CNV gain 21293372
esv3612878 CNV loss 21293372
esv3612879 CNV gain 21293372
esv3612880 CNV loss 21293372
esv3612881 CNV loss 21293372
esv9133 CNV loss 19470904
nsv1022088 CNV gain 25217958
nsv1030938 CNV loss 25217958
nsv1034617 CNV gain 25217958
nsv435843 CNV deletion 17901297
nsv436561 CNV deletion 17901297
nsv514414 CNV gain 21397061
nsv519863 CNV loss 19592680
nsv5706 CNV insertion 18451855
nsv5707 CNV deletion 18451855
nsv606665 CNV loss 21841781
nsv606668 CNV loss 21841781
nsv606669 CNV loss 21841781
nsv606670 CNV loss 21841781
nsv606671 CNV loss 21841781
nsv606672 CNV loss 21841781
nsv606673 CNV gain 21841781
nsv8078 CNV loss 18304495
nsv820039 CNV loss 19587683
nsv824074 CNV loss 20364138
nsv824077 CNV loss 20364138
nsv830965 CNV gain 17160897
nsv830966 CNV gain 17160897
nsv956020 CNV deletion 24416366
nsv966780 CNV duplication 23825009

Additional Variant Information for TRG-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRG-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TRG-AS1 Gene

Disorders for TRG-AS1 Gene

Additional Disease Information for TRG-AS1

No disorders were found for TRG-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TRG-AS1 Gene

Publications for TRG-AS1 Gene

  1. Repertoire of the human T cell gamma genes: high frequency of nonfunctional transcripts in thymus and mature T cells. (PMID: 2949984) Yoshikai Y … Mak TW (European journal of immunology 1987) 3 58

Products for TRG-AS1 Gene

Sources for TRG-AS1 Gene

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