TRF-GAA6-1-001 Gene (RNA Gene)

 

GC06M029159
GIFtS:
4
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Aliases for TRF-GAA6-1-001 Gene

Subcategory (RNA class) for TRF-GAA6-1-001 Gene

tRNA

Number of RNA Genes sources:

3 / 17

Aliases for TRF-GAA6-1-001 Gene

  • TRNA-Phe-GAA-6-1 162
  • TRF-GAA6-1 2
  • RF00005 168

Previous GeneCards Identifiers for TRF-GAA6-1-001 Gene

  • GC06M028766
  • GC06M029008

No data available for External Ids for TRF-GAA6-1-001 Gene

Summaries for TRF-GAA6-1-001 Gene

GeneCards Summary for TRF-GAA6-1-001 Gene

TRF-GAA6-1-001 is an RNA Gene, and is affiliated with the tRNA class.

Rfam classification for TRF-GAA6-1-001 Gene

Additional gene information for TRF-GAA6-1-001 Gene


  • Search for TRF-GAA6-1-001 at DataMed
  • Search for TRF-GAA6-1-001 at HumanCyc

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TRF-GAA6-1-001 Gene

Genomics for TRF-GAA6-1-001 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for TRF-GAA6-1-001 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH06J028764 Enhancer 0.9 ENCODE 600.7 -0.7 -709 0.2 PRDM10 ZNF629 LEF1 MTA2 PHF21A MTA1 PATZ1 BRD9 ZNF24 EZH2 TRF-GAA5-1-001 TRF-GAA6-1-001 ZKSCAN8 ZKSCAN3 ZSCAN9 HLA-F-AS1 ZSCAN12 ZKSCAN4 GPX6 ZNF603P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRF-GAA6-1-001 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TRF-GAA6-1-001 Gene

Genomic Locations for TRF-GAA6-1-001 Gene
chr6:28,763,597-28,763,670
(GRCh38/hg38)
Size:
74 bases
Orientation:
Minus strand

Genomic View for TRF-GAA6-1-001 Gene

Genes around TRF-GAA6-1-001 on UCSC Golden Path with GeneCards custom track
TRF-GAA6-1-001 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

TRF-GAA6-1-001 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRF-GAA6-1-001 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for TRF-GAA6-1-001 Gene

Proteins for TRF-GAA6-1-001 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for TRF-GAA6-1-001 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRF-GAA6-1-001 Gene

Domains & Families for TRF-GAA6-1-001 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRF-GAA6-1-001 Gene

Function for TRF-GAA6-1-001 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRF-GAA6-1-001 Gene

Localization for TRF-GAA6-1-001 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRF-GAA6-1-001 Gene

Pathways & Interactions for TRF-GAA6-1-001 Gene

PathCards logo

SuperPathways for TRF-GAA6-1-001 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRF-GAA6-1-001 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TRF-GAA6-1-001 Gene

Drugs & Compounds for TRF-GAA6-1-001 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for TRF-GAA6-1-001 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TRF-GAA6-1-001 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000651E1C_9606 tRNA 74 4

HGNC: 34825,

GtRNAdb: tRNA-Phe-GAA-6-1:CM000668.1:28731374-28731447, tRNA-Phe-GAA-6-1:CM000668.2:28763597-28763670,

Rfam: RF00005,

ENA: HG983970.1:1..74:tRNA,

TRF-GAA6-1-001 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for TRF-GAA6-1-001 Gene

No ASD Table

Relevant External Links for TRF-GAA6-1-001 Gene

GeneLoc Exon Structure for
TRF-GAA6-1-001

No data available for mRNA/cDNA for TRF-GAA6-1-001 Gene

Expression for TRF-GAA6-1-001 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRF-GAA6-1-001 Gene

Orthologs for TRF-GAA6-1-001 Gene

No data available for Orthologs and Evolution for TRF-GAA6-1-001 Gene

Paralogs for TRF-GAA6-1-001 Gene

No data available for Paralogs for TRF-GAA6-1-001 Gene

Variants for TRF-GAA6-1-001 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for TRF-GAA6-1-001 Gene

Disorders for TRF-GAA6-1-001 Gene

No disorders were found for TRF-GAA6-1-001 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRF-GAA6-1-001 Gene

Publications for TRF-GAA6-1-001 Gene

No publications were found for TRF-GAA6-1-001 Gene.

No data available for Mastermind for TRF-GAA6-1-001 Gene

Products for TRF-GAA6-1-001 Gene

Sources for TRF-GAA6-1-001 Gene