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TRF-GAA3-1 Gene(RNA Gene)

Transfer RNA-Phe (GAA) 3-1

GCID:
GC06M028901
GIFtS:
7
Genes Participants
UDN Logo

Aliases for TRF-GAA3-1 Gene

Subcategory (RNA class) for TRF-GAA3-1 Gene

tRNA

Quality Score for this RNA gene is

13

Aliases for TRF-GAA3-1 Gene

  • Transfer RNA-Phe (GAA) 3-1 2 3
  • Transfer RNA Phenylalanine 5 (Anticodon GAA) 2 3
  • TRNA-Phe-GAA-3-1 3
  • TRNAF5 3

External Ids for TRF-GAA3-1 Gene

ORGUL Members for TRF-GAA3-1 Gene

Previous HGNC Symbols for TRF-GAA3-1 Gene

  • TRNAF5

Previous GeneCards Identifiers for TRF-GAA3-1 Gene

  • GC06M028812
  • GC06M028816
  • GC06M028830
  • GC06M028846
  • GC06M028851
  • GC06M028855
  • GC06M028879
  • GC06M028889

Summaries for TRF-GAA3-1 Gene

GeneCards Summary for TRF-GAA3-1 Gene

TRF-GAA3-1 (Transfer RNA-Phe (GAA) 3-1) is an RNA Gene, and is affiliated with the tRNA class.

Additional gene information for TRF-GAA3-1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRF-GAA3-1 Gene

Genomics for TRF-GAA3-1 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for TRF-GAA3-1 Gene

Promoters and enhancers for TRF-GAA3-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH06J028807 Enhancer 1.4 Ensembl ENCODE dbSUPER 650.7 -0.2 -192 1 HDGF PKNOX1 ARNT ARID4B FEZF1 ZNF2 ZNF213 E2F8 FOS KLF13 GC06M028919 TRF-GAA3-1 TRIM27 ZKSCAN8 ZSCAN12 ZKSCAN3 ZSCAN23 ZFP57 ZKSCAN4 ZSCAN9
GH06J028808 Enhancer 0.7 ENCODE dbSUPER 650.7 -0.8 -774 0.2 HDGF ZNF316 POLR2A GTF2E2 IKZF1 MLLT1 GC06M028919 TRF-GAA3-1 ZFP57 GC06M028850 TRA-AGC6-1 GC06P028492
GH06J028802 Enhancer 1.4 Ensembl ENCODE dbSUPER 0.7 +4.8 4849 1.1 HDGF PKNOX1 ARNT SIN3A YBX1 ZNF2 YY1 ZNF766 ZNF213 E2F8 GC06M028916 GC06M028930 TRA-TGC7-1 ZSCAN12 ZKSCAN8 ZKSCAN3 ZKSCAN4 ZSCAN23 TRIM27 ZSCAN9
GH06J028810 Enhancer 1.1 ENCODE dbSUPER 0.7 -2.6 -2574 0.2 ARNT SIN3A ZNF2 ZNF48 NCOA1 ZNF184 NBN KDM1A WT1 SP7 GC06M028850 TRA-AGC6-1 PGBD1 ZSCAN23 ZSCAN26 ZSCAN12 ZSCAN31 GC06M028919 TRF-GAA3-1 GC06P028492
GH06J028811 Enhancer 1.1 ENCODE dbSUPER 0.7 -2.3 -2264 0.1 ARNT SIN3A ZNF2 ZNF48 ARID2 NCOA1 REST SMARCA4 ZNF184 NBN GC06M028850 TRA-AGC6-1 ZNF603P GC06M028919 TRF-GAA3-1 GC06P028492
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TRF-GAA3-1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRF-GAA3-1 Gene

Genomic Locations for TRF-GAA3-1 Gene
chr6:28,807,833-28,807,905
(GRCh38/hg38)
Size:
73 bases
Orientation:
Minus strand
chr6:28,775,610-28,775,682
(GRCh37/hg19)
Size:
73 bases
Orientation:
Minus strand

Genomic View for TRF-GAA3-1 Gene

Genes around TRF-GAA3-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRF-GAA3-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRF-GAA3-1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for TRF-GAA3-1 Gene

Proteins for TRF-GAA3-1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for TRF-GAA3-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRF-GAA3-1 Gene

Domains & Families for TRF-GAA3-1 Gene

Gene Families for TRF-GAA3-1 Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRF-GAA3-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRF-GAA3-1 Gene

Function for TRF-GAA3-1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for TRF-GAA3-1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRF-GAA3-1 Gene

Localization for TRF-GAA3-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRF-GAA3-1 Gene

Pathways & Interactions for TRF-GAA3-1 Gene

SuperPathways for TRF-GAA3-1 Gene

PathCards logo More details on SuperPathways for TRF-GAA3-1
No Data Available

Interacting Proteins for TRF-GAA3-1 Gene

Gene Ontology (GO) - Biological Process for TRF-GAA3-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRF-GAA3-1 Gene

Drugs & Compounds for TRF-GAA3-1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for TRF-GAA3-1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for TRF-GAA3-1 Gene

(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRF-GAA3-1 Gene

No ASD Table

Relevant External Links for TRF-GAA3-1 Gene

GeneLoc Exon Structure for
TRF-GAA3-1
ECgene alternative splicing isoforms for
TRF-GAA3-1

Expression for TRF-GAA3-1 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRF-GAA3-1 Gene

Orthologs for TRF-GAA3-1 Gene

No data available for Orthologs and Evolution for TRF-GAA3-1 Gene

Paralogs for TRF-GAA3-1 Gene

No data available for Paralogs for TRF-GAA3-1 Gene

Variants for TRF-GAA3-1 Gene

Additional Variant Information for TRF-GAA3-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRF-GAA3-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRF-GAA3-1 Gene

Disorders for TRF-GAA3-1 Gene

No disorders were found for TRF-GAA3-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRF-GAA3-1 Gene

Publications for TRF-GAA3-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3 58

Products for TRF-GAA3-1 Gene

Sources for TRF-GAA3-1 Gene

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