Aliases for TRF-GAA11-1 Gene

Aliases for TRF-GAA11-1 Gene

  • TRNA-Phe (Anticodon GAA) 11-1 2 3
  • Transfer RNA Phenylalanine 15 (Anticodon GAA) Pseudogene 2 3
  • Transfer RNA-Phe (GAA) 11-1 2 3
  • TRNA-Phe-GAA-11-1 2 3
  • TRNAF15P 3

External Ids for TRF-GAA11-1 Gene

Previous HGNC Symbols for TRF-GAA11-1 Gene

  • TRNAF15P

Previous GeneCards Identifiers for TRF-GAA11-1 Gene

  • GC06M028729
  • GC06M028734
  • GC06M029032

Summaries for TRF-GAA11-1 Gene

GeneCards Summary for TRF-GAA11-1 Gene

TRF-GAA11-1 (TRNA-Phe (Anticodon GAA) 11-1) is a Pseudogene.

Additional gene information for TRF-GAA11-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TRF-GAA11-1 Gene

Genomics for TRF-GAA11-1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TRF-GAA11-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J028729 Enhancer 1.2 ENCODE dbSUPER 600.7 -1.6 -1598 2.3 GATAD2A TEAD4 PRDM10 ZNF629 TFE3 RFX1 LEF1 SOX13 IKZF1 ZNF692 HG983975 TRA-CGC4-1 TRF-GAA11-1 piR-36252-004 ZSCAN12 ZSCAN23 ZSCAN26 ZKSCAN8 TRIM27 ZKSCAN4
GH06J028727 Enhancer 1.1 ENCODE dbSUPER 600.7 +1.0 1011 0.2 HNRNPL ZNF629 MTA2 PHF21A ZNF24 MTA1 BRD9 ZNF501 HDAC1 SOX6 HG983975 KR153221 TRT-AGT3-1 TRF-GAA11-1 ZKSCAN8 ZSCAN12 TRIM27 ZKSCAN3 ZSCAN23 ZSCAN9
GH06J028726 Enhancer 0.8 ENCODE dbSUPER 600.7 +1.5 1451 0.2 ZNF629 UBTF MYNN ZNF644 ZNF335 ZNF395 ATF4 ZFP91 ZNF366 ADNP HG983975 KR153221 TRT-AGT3-1 TRF-GAA11-1 ZBED9 TRIM27
GH06J028725 Enhancer 0.8 ENCODE dbSUPER 600.7 +1.8 1811 0.2 PATZ1 UBTF ZNF395 ZNF384 ZFP91 CBX1 ADNP HDAC2 NFATC3 ZNF624 HG983975 KR153221 TRT-AGT3-1 TRF-GAA11-1 ZBED9 TRIM27
GH06J028728 Enhancer 0.8 ENCODE dbSUPER 600.7 +0.0 11 0.2 ZNF24 ATF3 ZSCAN29 NFIC CUX1 TBP CEBPG POLR3A ZNF592 ZNF395 HG983975 TRT-AGT3-1 TRF-GAA11-1 ZBED9 TRIM27
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRF-GAA11-1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TRF-GAA11-1 Gene

Genomic Locations for TRF-GAA11-1 Gene
chr6:28,727,078-28,727,150
(GRCh38/hg38)
Size:
73 bases
Orientation:
Minus strand
chr6:28,694,855-28,694,927
(GRCh37/hg19)
Size:
73 bases
Orientation:
Minus strand

Genomic View for TRF-GAA11-1 Gene

Genes around TRF-GAA11-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRF-GAA11-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRF-GAA11-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRF-GAA11-1 Gene

Proteins for TRF-GAA11-1 Gene

Post-translational modifications for TRF-GAA11-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRF-GAA11-1 Gene

Domains & Families for TRF-GAA11-1 Gene

Gene Families for TRF-GAA11-1 Gene

genes like me logo Genes that share domains with TRF-GAA11-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRF-GAA11-1 Gene

Function for TRF-GAA11-1 Gene

Phenotypes From GWAS Catalog for TRF-GAA11-1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRF-GAA11-1 Gene

Localization for TRF-GAA11-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRF-GAA11-1 Gene

Pathways & Interactions for TRF-GAA11-1 Gene

PathCards logo

SuperPathways for TRF-GAA11-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRF-GAA11-1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TRF-GAA11-1 Gene

Drugs & Compounds for TRF-GAA11-1 Gene

No Compound Related Data Available

Transcripts for TRF-GAA11-1 Gene

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRF-GAA11-1 Gene

No ASD Table

Relevant External Links for TRF-GAA11-1 Gene

GeneLoc Exon Structure for
TRF-GAA11-1

No data available for mRNA/cDNA for TRF-GAA11-1 Gene

Expression for TRF-GAA11-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRF-GAA11-1 Gene

Orthologs for TRF-GAA11-1 Gene

No data available for Orthologs and Evolution for TRF-GAA11-1 Gene

Paralogs for TRF-GAA11-1 Gene

No data available for Paralogs for TRF-GAA11-1 Gene

Variants for TRF-GAA11-1 Gene

Additional Variant Information for TRF-GAA11-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRF-GAA11-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRF-GAA11-1 Gene

Disorders for TRF-GAA11-1 Gene

No disorders were found for TRF-GAA11-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRF-GAA11-1 Gene

Publications for TRF-GAA11-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3

No data available for Mastermind for TRF-GAA11-1 Gene

Products for TRF-GAA11-1 Gene

Sources for TRF-GAA11-1 Gene