Aliases for TRE-TTC1-2 Gene

Subcategory (RNA class) for TRE-TTC1-2 Gene

tRNA

Number of RNA Genes sources:

3 / 17

Aliases for TRE-TTC1-2 Gene

  • TRNA-Glu (Anticodon TTC) 1-2 2 3
  • Transfer RNA Glutamic Acid 20 (Anticodon UUC) 2 3
  • Transfer RNA-Glu (TTC) 1-1 2 3
  • Transfer RNA-Glu (TTC) 1-2 2 3
  • TRNA-Glu-TTC-1-1 3 162
  • TRNA-Glu-TTC-1-2 2 162
  • TRE-TTC1-1 2 3
  • TRNA-Glu (TTC) 1-2 3
  • TRE-TTC1-2 2
  • TRNAE20 3
  • RF00005 168

External Ids for TRE-TTC1-2 Gene

Previous HGNC Symbols for TRE-TTC1-2 Gene

  • TRNAE20
  • TRE-TTC1-1

Previous GeneCards Identifiers for TRE-TTC1-2 Gene

  • GC02M130337

Summaries for TRE-TTC1-2 Gene

GeneCards Summary for TRE-TTC1-2 Gene

TRE-TTC1-2 (TRNA-Glu (Anticodon TTC) 1-2) is an RNA Gene, and is affiliated with the tRNA class.

Rfam classification for TRE-TTC1-2 Gene

Additional gene information for TRE-TTC1-2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TRE-TTC1-2 Gene

Genomics for TRE-TTC1-2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TRE-TTC1-2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J041056 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 -0.5 -484 9.7 ZNF221 SP1 HNRNPL GATAD2A CTCF ATF7 TEAD4 PRDM10 REST ZNF629 WBP4 ELF1 TRE-TTC1-2 NAA16 TPTE2P5 LINC00548 MTRF1 RNU6-57P CYCSP34 lnc-KBTBD6-1
GH13J041052 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 0.4 +6.8 6812 3.2 CEBPG CTCF PRDM10 IKZF1 BACH1 RAD21 TCF12 IKZF2 SP1 ZNF24 WBP4 ELF1 RGCC CYCSP34 NAA16 TRE-TTC1-2 piR-50357-049 SLC25A15
GH13J041049 Enhancer 0.8 FANTOM5 ENCODE dbSUPER 0.4 +10.5 10527 1.3 PRDM1 RBM22 JUN WBP4 ELF1 RGCC NAA16 TRE-TTC1-2 piR-50357-049 SLC25A15
GH13J041032 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.3 +27.0 27008 4.8 ATF7 ZNF600 ATF2 SPI1 ATF3 JUN ZBTB33 JUND ZNF217 CREB1 WBP4 SUGT1P3 piR-50357-049 ELF1 TRE-TTC1-2 SLC25A15
GH13J041039 Enhancer 0.4 Ensembl 0.4 +20.1 20108 2.6 CEBPB FOS ZNF652 WBP4 piR-50357-049 TRE-TTC1-2 ELF1 SLC25A15
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRE-TTC1-2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TRE-TTC1-2 Gene

Genomic Locations for TRE-TTC1-2 Gene
chr13:41,060,738-41,060,809
(GRCh38/hg38)
Size:
72 bases
Orientation:
Minus strand
chr13:41,634,874-41,634,945
(GRCh37/hg19)
Size:
72 bases
Orientation:
Minus strand

Genomic View for TRE-TTC1-2 Gene

Genes around TRE-TTC1-2 on UCSC Golden Path with GeneCards custom track
TRE-TTC1-2 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
TRE-TTC1-2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRE-TTC1-2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRE-TTC1-2 Gene

Proteins for TRE-TTC1-2 Gene

Post-translational modifications for TRE-TTC1-2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRE-TTC1-2 Gene

Domains & Families for TRE-TTC1-2 Gene

Gene Families for TRE-TTC1-2 Gene

genes like me logo Genes that share domains with TRE-TTC1-2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRE-TTC1-2 Gene

Function for TRE-TTC1-2 Gene

Phenotypes From GWAS Catalog for TRE-TTC1-2 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRE-TTC1-2 Gene

Localization for TRE-TTC1-2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRE-TTC1-2 Gene

Pathways & Interactions for TRE-TTC1-2 Gene

PathCards logo

SuperPathways for TRE-TTC1-2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRE-TTC1-2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TRE-TTC1-2 Gene

Drugs & Compounds for TRE-TTC1-2 Gene

No Compound Related Data Available

Transcripts for TRE-TTC1-2 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TRE-TTC1-2 Gene

TRE-TTC1-2 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRE-TTC1-2 Gene

No ASD Table

Relevant External Links for TRE-TTC1-2 Gene

GeneLoc Exon Structure for
TRE-TTC1-2

No data available for mRNA/cDNA for TRE-TTC1-2 Gene

Expression for TRE-TTC1-2 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRE-TTC1-2 Gene

Orthologs for TRE-TTC1-2 Gene

No data available for Orthologs and Evolution for TRE-TTC1-2 Gene

Paralogs for TRE-TTC1-2 Gene

No data available for Paralogs for TRE-TTC1-2 Gene

Variants for TRE-TTC1-2 Gene

Additional Variant Information for TRE-TTC1-2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRE-TTC1-2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRE-TTC1-2 Gene

Disorders for TRE-TTC1-2 Gene

No disorders were found for TRE-TTC1-2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRE-TTC1-2 Gene

Publications for TRE-TTC1-2 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3

No data available for Mastermind for TRE-TTC1-2 Gene

Products for TRE-TTC1-2 Gene

Sources for TRE-TTC1-2 Gene