Aliases for TRE-CTC11-1 Gene

Aliases for TRE-CTC11-1 Gene

  • TRNA-Glu (CTC) 11-1 2 3
  • Transfer RNA Glutamic Acid 35 (Anticodon CUC) Pseudogene 2 3
  • Transfer RNA-Glu (CTC) 11-1 2 3
  • TRNA-Glu-CTC-11-1 2
  • TRNAE35P 3

External Ids for TRE-CTC11-1 Gene

Previous HGNC Symbols for TRE-CTC11-1 Gene

  • TRNAE35P

Previous GeneCards Identifiers for TRE-CTC11-1 Gene

  • GC08U902099

Summaries for TRE-CTC11-1 Gene

GeneCards Summary for TRE-CTC11-1 Gene

TRE-CTC11-1 (TRNA-Glu (CTC) 11-1) is a Pseudogene.

Additional gene information for TRE-CTC11-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TRE-CTC11-1 Gene

Genomics for TRE-CTC11-1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TRE-CTC11-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J011934 Enhancer 0.8 Ensembl ENCODE 250.7 -1.6 -1550 1 FOXA2 ZNF316 NFE2 MAFG NRF1 NR2F6 L3MBTL2 ARID1B RNF2 CTBP1 HG983769 OR7E161P TRE-CTC11-1 piR-35892-003 ENSG00000269918 DEFB136 DEFB135 ENSG00000255174 DEFB134 FAM66A
GH08J011936 Enhancer 0.6 Ensembl 250.7 +0.4 429 1 ZNF592 MNT PRDM10 CTCF FOXM1 EGR1 NRF1 TCF12 ELF3 L3MBTL2 HG983769 TRE-CTC11-1 piR-35892-003 ENSG00000269918 DEFB136 DEFB135 NEIL2 ENSG00000287755 FJ601678-100 HSALNG0063467-003
GH08J011935 Enhancer 0.3 Ensembl 250.7 -0.8 -770 0.2 SCRT2 HG983769 OR7E161P TRE-CTC11-1 piR-35892-003 DEFB136 ENSG00000269918 DEFB135 HSALNG0063467-003 CTSB
GH08J011937 Enhancer 0.3 Ensembl 250.7 -0.4 -370 0.2 SCRT2 HG983769 TRE-CTC11-1 piR-35892-003 DEFB136 DEFB135 ENSG00000269918 HSALNG0063467-003 CTSB
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRE-CTC11-1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TRE-CTC11-1 Gene

Latest Assembly
chr8:11,935,871-11,935,942
(GRCh38/hg38)
Size:
72 bases
Orientation:
Plus strand

Previous Assembly
chr8:11,793,380-11,793,451
(GRCh37/hg19 by Entrez Gene)
Size:
72 bases
Orientation:
Plus strand

Genomic View for TRE-CTC11-1 Gene

Genes around TRE-CTC11-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRE-CTC11-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRE-CTC11-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRE-CTC11-1 Gene

Proteins for TRE-CTC11-1 Gene

Post-translational modifications for TRE-CTC11-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRE-CTC11-1 Gene

Domains & Families for TRE-CTC11-1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRE-CTC11-1 Gene

Function for TRE-CTC11-1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRE-CTC11-1 Gene

Localization for TRE-CTC11-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRE-CTC11-1 Gene

Pathways & Interactions for TRE-CTC11-1 Gene

PathCards logo

SuperPathways for TRE-CTC11-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRE-CTC11-1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TRE-CTC11-1 Gene

Drugs & Compounds for TRE-CTC11-1 Gene

No Compound Related Data Available

Transcripts for TRE-CTC11-1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRE-CTC11-1 Gene

No ASD Table

Relevant External Links for TRE-CTC11-1 Gene

GeneLoc Exon Structure for
TRE-CTC11-1

No data available for mRNA/cDNA for TRE-CTC11-1 Gene

Expression for TRE-CTC11-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRE-CTC11-1 Gene

Orthologs for TRE-CTC11-1 Gene

No data available for Orthologs and Evolution for TRE-CTC11-1 Gene

Paralogs for TRE-CTC11-1 Gene

No data available for Paralogs for TRE-CTC11-1 Gene

Variants for TRE-CTC11-1 Gene

Additional Variant Information for TRE-CTC11-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRE-CTC11-1
Leiden Open Variation Database (LOVD)
TRE-CTC11-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRE-CTC11-1 Gene

Disorders for TRE-CTC11-1 Gene

No disorders were found for TRE-CTC11-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRE-CTC11-1 Gene

Publications for TRE-CTC11-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3

No data available for Mastermind for TRE-CTC11-1 Gene

Products for TRE-CTC11-1 Gene

Sources for TRE-CTC11-1 Gene