TRD-GTC3-1 Gene (RNA Gene)

TRNA-Asp (Anticodon GTC) 3-1

GC06M027584
GIFtS:
5

Aliases for TRD-GTC3-1 Gene

Subcategory (RNA class) for TRD-GTC3-1 Gene

tRNA

Number of RNA Genes sources:

3 / 14

Aliases for TRD-GTC3-1 Gene

  • TRNA-Asp (Anticodon GTC) 3-1 2 3
  • Transfer RNA Aspartic Acid 9 (Anticodon GUC) 2 3
  • Transfer RNA-Asp (GTC) 3-1 2 3
  • TRNA-Asp (GTC) 3-1 3
  • TRNA-Asp-GTC-3-1 165
  • TRD-GTC3-1 2
  • RF00005 172
  • TRNAD9 3

External Ids for TRD-GTC3-1 Gene

Previous HGNC Symbols for TRD-GTC3-1 Gene

  • TRNAD9

Summaries for TRD-GTC3-1 Gene

GeneCards Summary for TRD-GTC3-1 Gene

TRD-GTC3-1 (TRNA-Asp (Anticodon GTC) 3-1) is an RNA Gene, and is affiliated with the tRNA class.

Rfam classification for TRD-GTC3-1 Gene

Additional gene information for TRD-GTC3-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TRD-GTC3-1 Gene

Genomics for TRD-GTC3-1 Gene

GeneHancer (GH) Regulatory Elements for TRD-GTC3-1 Gene

Promoters and enhancers for TRD-GTC3-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH06J027583 Enhancer 0.9 ENCODE 500.7 +0.0 31 0.2 NCOR1 FOS ZBTB5 AFF1 NR3C1 MYC TEAD1 SREBF2 ZSCAN9 OSR2 AB330774-012 TRD-GTC3-1 ZSCAN12 ZSCAN23 ZSCAN26 ZNF322 ZKSCAN8 PGBD1 ZNF391
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRD-GTC3-1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRD-GTC3-1 Gene

Genomic Locations for TRD-GTC3-1 Gene
chr6:27,583,457-27,583,528
(GRCh38/hg38)
Size:
72 bases
Orientation:
Minus strand
chr6:27,551,236-27,551,307
(GRCh37/hg19)
Size:
72 bases
Orientation:
Minus strand

Genomic View for TRD-GTC3-1 Gene

Genes around TRD-GTC3-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRD-GTC3-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRD-GTC3-1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for TRD-GTC3-1 Gene

Proteins for TRD-GTC3-1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for TRD-GTC3-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRD-GTC3-1 Gene

Domains & Families for TRD-GTC3-1 Gene

Gene Families for TRD-GTC3-1 Gene

HGNC:
genes like me logo Genes that share domains with TRD-GTC3-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRD-GTC3-1 Gene

Function for TRD-GTC3-1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRD-GTC3-1 Gene

Localization for TRD-GTC3-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRD-GTC3-1 Gene

Pathways & Interactions for TRD-GTC3-1 Gene

PathCards logo

SuperPathways for TRD-GTC3-1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for TRD-GTC3-1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TRD-GTC3-1 Gene

Drugs & Compounds for TRD-GTC3-1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for TRD-GTC3-1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for TRD-GTC3-1 Gene

1 RNACentral transcripts :
1 ENA transcripts :
2 GtRNAdb transcripts :
1 Rfam transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRD-GTC3-1 Gene

No ASD Table

Relevant External Links for TRD-GTC3-1 Gene

GeneLoc Exon Structure for
TRD-GTC3-1

Expression for TRD-GTC3-1 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRD-GTC3-1 Gene

Orthologs for TRD-GTC3-1 Gene

No data available for Orthologs and Evolution for TRD-GTC3-1 Gene

Paralogs for TRD-GTC3-1 Gene

No data available for Paralogs for TRD-GTC3-1 Gene

Variants for TRD-GTC3-1 Gene

Additional Variant Information for TRD-GTC3-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRD-GTC3-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRD-GTC3-1 Gene

Disorders for TRD-GTC3-1 Gene

No disorders were found for TRD-GTC3-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRD-GTC3-1 Gene

Publications for TRD-GTC3-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3 54

ExternalLinks

View latest publications for TRD-GTC3-1 gene in Mastermind

Products for TRD-GTC3-1 Gene

Sources for TRD-GTC3-1 Gene