Aliases for TRD-GTC3-1 Gene

Data sources for TRD-GTC3-1 Gene:

Subcategory (RNA class) for TRD-GTC3-1 Gene

tRNA

Aliases for TRD-GTC3-1 Gene

External Ids for TRD-GTC3-1 Gene

Previous HGNC Symbols for TRD-GTC3-1 Gene

  • TRNAD9

Previous GeneCards Identifiers for TRD-GTC3-1 Gene

  • GC06M027584

Summaries for TRD-GTC3-1 Gene

GeneCards Summary for TRD-GTC3-1 Gene

TRD-GTC3-1 (TRNA-Asp (Anticodon GTC) 3-1) is an RNA Gene, and is affiliated with the tRNA class.

Rfam classification for TRD-GTC3-1 Gene

Additional gene information for TRD-GTC3-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TRD-GTC3-1 Gene

Genomics for TRD-GTC3-1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TRD-GTC3-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J027583 Enhancer 0.9 ENCODE 250.7 +0.0 31 0.2 TBP CEBPA CEBPB ZNF513 ARNT SIN3A ZNF511 MIER3 ZSCAN9 RFX5 TRD-GTC3-1 ZSCAN26 ZSCAN23 PGBD1 ZSCAN12 ZNF391 HSALNG0048884 HSALNG0048885 ZNF184 H2BC13
GH06J027576 Enhancer 0.8 ENCODE 0.4 +7.4 7401 0.2 TBP MNT IRF2 NUFIP1 DEAF1 ZFP91 TARDBP SKIL ADNP HDAC2 HSALNG0048884 HSALNG0048885 TRK-TTT9-1 TRD-GTC3-1 ZNF184 H2BC13
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRD-GTC3-1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TRD-GTC3-1 Gene

Latest Assembly
chr6:27,583,457-27,583,528
(GRCh38/hg38)
Size:
72 bases
Orientation:
Minus strand

Previous Assembly
chr6:27,551,236-27,551,307
(GRCh37/hg19 by Entrez Gene)
Size:
72 bases
Orientation:
Minus strand

Genomic View for TRD-GTC3-1 Gene

Genes around TRD-GTC3-1 on UCSC Golden Path with GeneCards custom track
TRD-GTC3-1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
TRD-GTC3-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRD-GTC3-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRD-GTC3-1 Gene

Proteins for TRD-GTC3-1 Gene

Post-translational modifications for TRD-GTC3-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRD-GTC3-1 Gene

Domains & Families for TRD-GTC3-1 Gene

Gene Families for TRD-GTC3-1 Gene

genes like me logo Genes that share domains with TRD-GTC3-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRD-GTC3-1 Gene

Function for TRD-GTC3-1 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRD-GTC3-1 Gene

Localization for TRD-GTC3-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRD-GTC3-1 Gene

Pathways & Interactions for TRD-GTC3-1 Gene

PathCards logo

SuperPathways for TRD-GTC3-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRD-GTC3-1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TRD-GTC3-1 Gene

Drugs & Compounds for TRD-GTC3-1 Gene

No Compound Related Data Available

Transcripts for TRD-GTC3-1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TRD-GTC3-1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00006D74B2_9606 tRNA 72 3

GtRNAdb: tRNA-Asp-GTC-3-1:CM000668.2:27583457-27583528,

Rfam: RF00005,

ENA: HG983676.1:1..72:tRNA,

URS00000711F0_9606 misc_RNA 39 1

ENA: AB330774.1:1..39:misc_RNA,

URS00002B094D_9606 misc_RNA 30 1

ENA: AB330779.1:1..31:misc_RNA,

TRD-GTC3-1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for TRD-GTC3-1 Gene

No ASD Table

Relevant External Links for TRD-GTC3-1 Gene

GeneLoc Exon Structure for
TRD-GTC3-1

No data available for mRNA/cDNA for TRD-GTC3-1 Gene

Expression for TRD-GTC3-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRD-GTC3-1 Gene

Orthologs for TRD-GTC3-1 Gene

No data available for Orthologs and Evolution for TRD-GTC3-1 Gene

Paralogs for TRD-GTC3-1 Gene

No data available for Paralogs for TRD-GTC3-1 Gene

Variants for TRD-GTC3-1 Gene

Additional Variant Information for TRD-GTC3-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRD-GTC3-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRD-GTC3-1 Gene

Disorders for TRD-GTC3-1 Gene

No disorders were found for TRD-GTC3-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRD-GTC3-1 Gene

Publications for TRD-GTC3-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3

Products for TRD-GTC3-1 Gene

Sources for TRD-GTC3-1 Gene