Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TRC-GCA2-3 Gene

Subcategory (RNA class) for TRC-GCA2-3 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for TRC-GCA2-3 Gene

  • Transfer RNA-Cys (GCA) 2-3 2 3
  • Transfer RNA Cysteine 9 (Anticodon GCA) 2 3
  • Transfer RNA-Cys (GCA) 2-2 2 3
  • TRNA-Cys-GCA-2-2 3
  • TRC-GCA2-2 3
  • TRNAC9 3

External Ids for TRC-GCA2-3 Gene

Previous HGNC Symbols for TRC-GCA2-3 Gene

  • TRNAC9
  • TRC-GCA2-2

Summaries for TRC-GCA2-3 Gene

GeneCards Summary for TRC-GCA2-3 Gene

TRC-GCA2-3 (Transfer RNA-Cys (GCA) 2-3) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TRC-GCA2-3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRC-GCA2-3 Gene

Genomics for TRC-GCA2-3 Gene

GeneHancer (GH) Regulatory Elements for TRC-GCA2-3 Gene

Promoters and enhancers for TRC-GCA2-3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I039151 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 550.8 +0.5 469 3.9 MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 MCM3 PLXDC1 TRC-GCA2-3 TRC-GCA2-4 MED1 CDK12 MED24 LOC105371762 SNORD124 RPL23 RPL19
GH17I039143 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 +9.5 9461 2.2 ZFP69B ZNF692 BHLHE40 MNT FOS TRC-GCA2-3 PLXDC1 PIR45010
GH17I039138 Enhancer 0.7 ENCODE 0.4 +14.7 14704 1.9 JUN FOSL1 ZNF143 SMARCC2 RCOR1 FOS TCF7L2 DEK SMARCC1 STAT1 LRRC37A11P TRC-GCA2-3 PLXDC1 PIR45010
GH17I039118 Enhancer 0.9 Ensembl ENCODE 0.3 +34.8 34832 0.9 PKNOX1 USF1 BMI1 IRF4 NFYB ZNF207 ATF7 FOS IKZF2 NFYC PLXDC1 PIR45010 TRC-GCA2-3
GH17I039131 Enhancer 0.8 Ensembl ENCODE 0.3 +21.7 21681 1 ZNF639 MAFG BACH1 FOSL1 MAFF ZNF316 SMARCA4 IKZF1 NFE2 PRDM10 PLXDC1 TRC-GCA2-3 PIR45010
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TRC-GCA2-3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRC-GCA2-3 Gene

Genomic Locations for TRC-GCA2-3 Gene
chr17:39,153,734-39,153,805
(GRCh38/hg38)
Size:
72 bases
Orientation:
Minus strand
chr17:37,309,987-37,310,058
(GRCh37/hg19)

Genomic View for TRC-GCA2-3 Gene

Genes around TRC-GCA2-3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRC-GCA2-3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRC-GCA2-3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRC-GCA2-3 Gene

Proteins for TRC-GCA2-3 Gene

Post-translational modifications for TRC-GCA2-3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRC-GCA2-3 Gene

Domains & Families for TRC-GCA2-3 Gene

Gene Families for TRC-GCA2-3 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRC-GCA2-3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRC-GCA2-3 Gene

Function for TRC-GCA2-3 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRC-GCA2-3 Gene

Localization for TRC-GCA2-3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRC-GCA2-3 Gene

Pathways & Interactions for TRC-GCA2-3 Gene

SuperPathways for TRC-GCA2-3 Gene

No Data Available

Interacting Proteins for TRC-GCA2-3 Gene

Gene Ontology (GO) - Biological Process for TRC-GCA2-3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRC-GCA2-3 Gene

Drugs & Compounds for TRC-GCA2-3 Gene

No Compound Related Data Available

Transcripts for TRC-GCA2-3 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRC-GCA2-3 Gene

No ASD Table

Relevant External Links for TRC-GCA2-3 Gene

GeneLoc Exon Structure for
TRC-GCA2-3
ECgene alternative splicing isoforms for
TRC-GCA2-3

No data available for mRNA/cDNA for TRC-GCA2-3 Gene

Expression for TRC-GCA2-3 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRC-GCA2-3 Gene

Orthologs for TRC-GCA2-3 Gene

No data available for Orthologs and Evolution for TRC-GCA2-3 Gene

Paralogs for TRC-GCA2-3 Gene

No data available for Paralogs for TRC-GCA2-3 Gene

Variants for TRC-GCA2-3 Gene

Additional Variant Information for TRC-GCA2-3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRC-GCA2-3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRC-GCA2-3 Gene

Disorders for TRC-GCA2-3 Gene

No disorders were found for TRC-GCA2-3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRC-GCA2-3 Gene

Publications for TRC-GCA2-3 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3 58

Products for TRC-GCA2-3 Gene

Sources for TRC-GCA2-3 Gene

Content
Loading form....