Aliases for TRBV5-2 Gene

Aliases for TRBV5-2 Gene

  • T Cell Receptor Beta Variable 5-2 (Pseudogene) 2 3 5
  • TCRBV31S1 2 3
  • TCRBV5S2P 2 3
  • TRBV52 2 3
  • TRBV5-2 5

External Ids for TRBV5-2 Gene

Previous GeneCards Identifiers for TRBV5-2 Gene

  • GC07U990236
  • GC07P141424
  • GC07P141501
  • GC07P141547
  • GC07P141740
  • GC07M142252
  • GC07M142260
  • GC07M142262
  • GC07M142285
  • GC07M142309
  • GC07P142622
  • GC07P142934
  • GC07P144310
  • GC07P144442
  • GC07P144660
  • GC07P144899
  • GC07P143081
  • GC07P143232
  • GC07P143429
  • GC07P143580
  • GC07P143723
  • GC07P143852
  • GC07P143994
  • GC07P144167

Summaries for TRBV5-2 Gene

GeneCards Summary for TRBV5-2 Gene

TRBV5-2 (T Cell Receptor Beta Variable 5-2 (Pseudogene)) is a Pseudogene.

Additional gene information for TRBV5-2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TRBV5-2 Gene

Genomics for TRBV5-2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TRBV5-2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J142374 Enhancer 0.2 Ensembl 600.7 +1.6 1627 1.4 NONHSAG049003.2 TRBV5-2 TRBV6-4 TRBV7-2 lnc-PRSS2-6 TRB
GH07J142372 Enhancer 0.2 Ensembl 600.7 -0.1 -72 0.4 NONHSAG049003.2 TRBV5-2 TRBV6-4 NONHSAG049004.2 TRBV7-2 lnc-PRSS2-6 TRB
GH07J142371 Enhancer 0.2 Ensembl 600.7 -0.6 -572 0.2 NONHSAG049003.2 TRBV5-2 TRBV6-4 NONHSAG049004.2 TRBV7-2 lnc-PRSS2-6 TRB
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRBV5-2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TRBV5-2 Gene

Genomic Locations for TRBV5-2 Gene
chr7:142,372,473-142,372,913
(GRCh38/hg38)
Size:
441 bases
Orientation:
Plus strand
chr7:142,259,058-142,259,498
(GRCh37/hg19)
Size:
441 bases
Orientation:
Minus strand

Genomic View for TRBV5-2 Gene

Genes around TRBV5-2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRBV5-2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRBV5-2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRBV5-2 Gene

Proteins for TRBV5-2 Gene

Post-translational modifications for TRBV5-2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRBV5-2 Gene

Domains & Families for TRBV5-2 Gene

Gene Families for TRBV5-2 Gene

genes like me logo Genes that share domains with TRBV5-2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRBV5-2 Gene

Function for TRBV5-2 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRBV5-2 Gene

Localization for TRBV5-2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRBV5-2 Gene

Pathways & Interactions for TRBV5-2 Gene

PathCards logo

SuperPathways for TRBV5-2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRBV5-2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TRBV5-2 Gene

Drugs & Compounds for TRBV5-2 Gene

No Compound Related Data Available

Transcripts for TRBV5-2 Gene

mRNA/cDNA for TRBV5-2 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TRBV5-2 Gene

No ASD Table

Relevant External Links for TRBV5-2 Gene

GeneLoc Exon Structure for
TRBV5-2

Expression for TRBV5-2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TRBV5-2 Gene

genes like me logo Genes that share expression patterns with TRBV5-2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRBV5-2 Gene

Orthologs for TRBV5-2 Gene

Evolution for TRBV5-2 Gene

ENSEMBL:
Gene Tree for TRBV5-2 (if available)
TreeFam:
Gene Tree for TRBV5-2 (if available)

No data available for Orthologs for TRBV5-2 Gene

Paralogs for TRBV5-2 Gene

No data available for Paralogs for TRBV5-2 Gene

Variants for TRBV5-2 Gene

Additional Variant Information for TRBV5-2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRBV5-2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRBV5-2 Gene

Disorders for TRBV5-2 Gene

No disorders were found for TRBV5-2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRBV5-2 Gene

Publications for TRBV5-2 Gene

  1. The complete 685-kilobase DNA sequence of the human beta T cell receptor locus. (PMID: 8650574) Rowen L … Hood L (Science (New York, N.Y.) 1996) 2 3
  2. Complementarity-determining region 3 spectratyping analysis of the TCR repertoire in multiple sclerosis. (PMID: 12707368) Matsumoto Y … Itoyama Y (Journal of immunology (Baltimore, Md. : 1950) 2003) 3

Products for TRBV5-2 Gene

Sources for TRBV5-2 Gene