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Aliases for TRBV3-1 Gene

Aliases for TRBV3-1 Gene

  • T Cell Receptor Beta Variable 3-1 2 3
  • T-Cell Receptor Beta Variable 3-1 5
  • V_segment Translation Product 3
  • TCRBV9S1A1T 3
  • TCRBV3S1 3
  • TRBV31 3

External Ids for TRBV3-1 Gene

Previous GeneCards Identifiers for TRBV3-1 Gene

  • GC07U990242
  • GC07P141338
  • GC07P141415
  • GC07P141461
  • GC07P141654
  • GC07P142157
  • GC07P142183
  • GC07P142311
  • GC07P142339
  • GC07P142406
  • GC07P142454
  • GC07P142580
  • GC07P142671
  • GC07P142738
  • GC07P142801
  • GC07P142588
  • GC07P142832
  • GC07P142993
  • GC07P143145
  • GC07P143345
  • GC07P143490
  • GC07P143624

Summaries for TRBV3-1 Gene

GeneCards Summary for TRBV3-1 Gene

TRBV3-1 (T Cell Receptor Beta Variable 3-1) is a Protein Coding gene. An important paralog of this gene is TRBV4-2.

Additional gene information for TRBV3-1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRBV3-1 Gene

Genomics for TRBV3-1 Gene

GeneHancer (GH) Regulatory Elements for TRBV3-1 Gene

Promoters and enhancers for TRBV3-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I142308 Enhancer 0.4 Ensembl dbSUPER 550.8 0.0 -41 0.2 TRBV3-1 TRB TRBV2
GH07I142307 Enhancer 0.3 FANTOM5 550.8 -0.9 -889 0.1 REST TRBV3-1 TRY2P TAS2R38 OR9A4 TRB TRBV2
GH07I142303 Enhancer 0.5 ENCODE dbSUPER 0.8 -4.8 -4767 0.1 CTCF TRB TRBV2 TRBV3-1
GH07I142313 Enhancer 0.4 ENCODE dbSUPER 0.8 +3.9 3931 0 TRBV4-1 TRBV3-1 TRB
GH07I142301 Enhancer 0.6 Ensembl dbSUPER 0.4 -7.3 -7341 0.4 CTCF POLR2A TRBV2 TRB TRBV3-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TRBV3-1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRBV3-1 Gene

Genomic Locations for TRBV3-1 Gene
chr7:142,308,542-142,309,048
(GRCh38/hg38)
Size:
507 bases
Orientation:
Plus strand
chr7:142,008,365-142,008,871
(GRCh37/hg19)

Genomic View for TRBV3-1 Gene

Genes around TRBV3-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRBV3-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRBV3-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRBV3-1 Gene

Proteins for TRBV3-1 Gene

  • Protein details for TRBV3-1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A576
    Recommended name:
    T-cell receptor beta variable 3-1
    Protein Accession:
    A0A576

    Protein attributes for TRBV3-1 Gene

    Size:
    114 amino acids
    Molecular mass:
    12928 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TRBV3-1 Gene

Post-translational modifications for TRBV3-1 Gene

No Post-translational modifications

Other Protein References for TRBV3-1 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for TRBV3-1 Gene

Domains & Families for TRBV3-1 Gene

Gene Families for TRBV3-1 Gene

Protein Domains for TRBV3-1 Gene

Suggested Antigen Peptide Sequences for TRBV3-1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRBV3-1: view

No data available for UniProtKB/Swiss-Prot for TRBV3-1 Gene

Function for TRBV3-1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRBV3-1 Gene

Localization for TRBV3-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRBV3-1 Gene

Pathways & Interactions for TRBV3-1 Gene

SuperPathways for TRBV3-1 Gene

No Data Available

Interacting Proteins for TRBV3-1 Gene

Gene Ontology (GO) - Biological Process for TRBV3-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRBV3-1 Gene

Drugs & Compounds for TRBV3-1 Gene

No Compound Related Data Available

Transcripts for TRBV3-1 Gene

mRNA/cDNA for TRBV3-1 Gene

(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TRBV3-1 Gene

No ASD Table

Relevant External Links for TRBV3-1 Gene

GeneLoc Exon Structure for
TRBV3-1
ECgene alternative splicing isoforms for
TRBV3-1

Expression for TRBV3-1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TRBV3-1 Gene

mRNA differential expression in normal tissues according to GTEx for TRBV3-1 Gene

This gene is overexpressed in Whole Blood (x33.1) and Spleen (x5.0).
genes like me logo Genes that share expression patterns with TRBV3-1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRBV3-1 Gene

Orthologs for TRBV3-1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TRBV3-1 Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia TRBV3-1 34
  • 53 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 34
  • 53 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 37 (a)
OneToMany
cow
(Bos Taurus)
Mammalia TRB@ 34
  • 31 (a)
ManyToMany
chicken
(Gallus gallus)
Aves -- 34
  • 26 (a)
ManyToMany
-- 34
  • 22 (a)
ManyToMany
-- 34
  • 20 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia -- 34
  • 38 (a)
ManyToMany
-- 34
  • 24 (a)
ManyToMany
Species where no ortholog for TRBV3-1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TRBV3-1 Gene

ENSEMBL:
Gene Tree for TRBV3-1 (if available)
TreeFam:
Gene Tree for TRBV3-1 (if available)

Paralogs for TRBV3-1 Gene

Paralogs for TRBV3-1 Gene

Pseudogenes.org Pseudogenes for TRBV3-1 Gene

genes like me logo Genes that share paralogs with TRBV3-1: view

Variants for TRBV3-1 Gene

Additional Variant Information for TRBV3-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRBV3-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRBV3-1 Gene

Disorders for TRBV3-1 Gene

Additional Disease Information for TRBV3-1

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for TRBV3-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TRBV3-1 Gene

Publications for TRBV3-1 Gene

  1. TCRBV20S1 and TCRBV3S1 gene segment polymorphisms in systemic sclerosis. (PMID: 18412309) Bredemeier M … Xavier RM (The Journal of rheumatology 2008) 3 44 58
  2. The complete 685-kilobase DNA sequence of the human beta T cell receptor locus. (PMID: 8650574) Rowen L … Hood L (Science (New York, N.Y.) 1996) 2 3 58
  3. A polymorphism in a staphylococcal enterotoxin receptor gene (T cell receptor BV3 recombination signal sequence) is not associated with unexplained sudden unexpected death in infancy in an Australian cohort. (PMID: 20362046) Highet AR … Goldwater PN (Microbial pathogenesis 2010) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  5. TCRBV3S1 and TCRBV18 gene segment polymorphisms in Brazilian Caucasoid and Black populations. (PMID: 11841483) Dresch C … Chies JA (European journal of immunogenetics : official journal of the British Society for Histocompatibility and Immunogenetics 2002) 3 58

Products for TRBV3-1 Gene

Sources for TRBV3-1 Gene

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