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Aliases for TRBV25-1 Gene

Aliases for TRBV25-1 Gene

  • T Cell Receptor Beta Variable 25-1 2 3
  • T-Cell Receptor Beta Variable 25-1 5
  • V_segment Translation Product 3
  • TCRBV11S1A1T 3
  • TCRBV25S1 3
  • TRBV251 3

External Ids for TRBV25-1 Gene

Previous GeneCards Identifiers for TRBV25-1 Gene

  • GC07U990185
  • GC07P141742
  • GC07P141818
  • GC07P141864
  • GC07P142058
  • GC07Pg41749
  • GC07P142381
  • GC07P142382
  • GC07P142394
  • GC07P142437
  • GC07P142483
  • GC07P142640
  • GC07P142710
  • GC07P142772
  • GC07P142819
  • GC07P142882
  • GC07P143016
  • GC07P143162
  • GC07P143362
  • GC07P143512
  • GC07P143641

Summaries for TRBV25-1 Gene

GeneCards Summary for TRBV25-1 Gene

TRBV25-1 (T Cell Receptor Beta Variable 25-1) is a Protein Coding gene. An important paralog of this gene is TRBV10-3.

Additional gene information for TRBV25-1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRBV25-1 Gene

Genomics for TRBV25-1 Gene

GeneHancer (GH) Regulatory Elements for TRBV25-1 Gene

Promoters and enhancers for TRBV25-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I142669 Enhancer 0.5 ENCODE 550.8 -1.2 -1246 0.2 CTCF TRIM22 REST RAD21 TRBV25-1 MTRNR2L6 TRB
GH07I142670 Enhancer 0.4 ENCODE 550.8 +0.6 601 1.5 NR2F1 SPI1 TRBV25-1 TRBV28 EPHB6 TRBVA TRB
GH07I142666 Promoter 0.5 EPDnew 0.8 -4.1 -4149 0.1 GC07P143903 GC07P143905 MTRNR2L6 TRBV25-1 TRB
GH07I142667 Enhancer 0.2 Ensembl 0.8 -3.2 -3239 0.2 GC07P143903 MTRNR2L6 TRBV25-1 TRB
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TRBV25-1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRBV25-1 Gene

Genomic Locations for TRBV25-1 Gene
chr7:142,670,740-142,671,244
(GRCh38/hg38)
Size:
505 bases
Orientation:
Plus strand
chr7:142,378,572-142,379,076
(GRCh37/hg19)

Genomic View for TRBV25-1 Gene

Genes around TRBV25-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRBV25-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRBV25-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRBV25-1 Gene

Proteins for TRBV25-1 Gene

  • Protein details for TRBV25-1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A075B6N4
    Recommended name:
    T-cell receptor beta variable 25-1
    Protein Accession:
    A0A075B6N4

    Protein attributes for TRBV25-1 Gene

    Size:
    114 amino acids
    Molecular mass:
    12983 Da
    Quaternary structure:
    No Data Available
  • Protein details for TRBV25-1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A5C2
    Recommended name:
    T-cell receptor beta variable 25-1
    Protein Accession:
    A0A5C2
    Secondary Accessions:
    • A0A0G2JML5

    Protein attributes for TRBV25-1 Gene

    Size:
    114 amino acids
    Molecular mass:
    13015 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TRBV25-1 Gene

Post-translational modifications for TRBV25-1 Gene

No Post-translational modifications

Other Protein References for TRBV25-1 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for TRBV25-1 Gene

Domains & Families for TRBV25-1 Gene

Gene Families for TRBV25-1 Gene

Protein Domains for TRBV25-1 Gene

Suggested Antigen Peptide Sequences for TRBV25-1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRBV25-1: view

No data available for UniProtKB/Swiss-Prot for TRBV25-1 Gene

Function for TRBV25-1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRBV25-1 Gene

Localization for TRBV25-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRBV25-1 Gene

Pathways & Interactions for TRBV25-1 Gene

SuperPathways for TRBV25-1 Gene

No Data Available

Interacting Proteins for TRBV25-1 Gene

Gene Ontology (GO) - Biological Process for TRBV25-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRBV25-1 Gene

Drugs & Compounds for TRBV25-1 Gene

No Compound Related Data Available

Transcripts for TRBV25-1 Gene

mRNA/cDNA for TRBV25-1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRBV25-1 Gene

No ASD Table

Relevant External Links for TRBV25-1 Gene

GeneLoc Exon Structure for
TRBV25-1
ECgene alternative splicing isoforms for
TRBV25-1

Expression for TRBV25-1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TRBV25-1 Gene

mRNA differential expression in normal tissues according to GTEx for TRBV25-1 Gene

This gene is overexpressed in Whole Blood (x17.9) and Brain - Nucleus accumbens (basal ganglia) (x6.9).

Protein differential expression in normal tissues from HIPED for TRBV25-1 Gene

This gene is overexpressed in Tlymphocyte (51.6), CD4 Tcells (8.8), and Peripheral blood mononuclear cells (7.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for TRBV25-1 Gene



Protein tissue co-expression partners for TRBV25-1 Gene

genes like me logo Genes that share expression patterns with TRBV25-1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRBV25-1 Gene

Orthologs for TRBV25-1 Gene

Evolution for TRBV25-1 Gene

ENSEMBL:
Gene Tree for TRBV25-1 (if available)
TreeFam:
Gene Tree for TRBV25-1 (if available)

No data available for Orthologs for TRBV25-1 Gene

Paralogs for TRBV25-1 Gene

Pseudogenes.org Pseudogenes for TRBV25-1 Gene

genes like me logo Genes that share paralogs with TRBV25-1: view

Variants for TRBV25-1 Gene

Additional Variant Information for TRBV25-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRBV25-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRBV25-1 Gene

Disorders for TRBV25-1 Gene

No disorders were found for TRBV25-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRBV25-1 Gene

Publications for TRBV25-1 Gene

  1. The complete 685-kilobase DNA sequence of the human beta T cell receptor locus. (PMID: 8650574) Rowen L … Hood L (Science (New York, N.Y.) 1996) 2 3 58

Products for TRBV25-1 Gene

Sources for TRBV25-1 Gene

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