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Aliases for TRBV23-1 Gene

Aliases for TRBV23-1 Gene

  • T Cell Receptor Beta Variable 23-1 (Non-Functional) 2 3
  • T-Cell Receptor Beta Variable 23-1 (Non-Functional) 5
  • T Cell Receptor Beta Variable 23-1 Pseudogene 3
  • TCRBV19S1P 3
  • TCRBV23S1 3
  • TRBV231 3

External Ids for TRBV23-1 Gene

Previous GeneCards Identifiers for TRBV23-1 Gene

  • GC07U990187
  • GC07P141718
  • GC07P141795
  • GC07P141841
  • GC07P142034
  • GC07Pg41726
  • GC07P142356
  • GC07P142361
  • GC07P142388
  • GC07P142427
  • GC07P142480
  • GC07P142637
  • GC07P142707
  • GC07P142769
  • GC07P142814
  • GC07P142878
  • GC07P143010
  • GC07P143159
  • GC07P143358
  • GC07P143507
  • GC07P143638

Summaries for TRBV23-1 Gene

GeneCards Summary for TRBV23-1 Gene

TRBV23-1 (T Cell Receptor Beta Variable 23-1 (Non-Functional)) is a Pseudogene. Diseases associated with TRBV23-1 include Angioimmunoblastic Lymphadenopathy With Dysproteinemia. An important paralog of this gene is TRBV23OR9-2.

Additional gene information for TRBV23-1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRBV23-1 Gene

Genomics for TRBV23-1 Gene

GeneHancer (GH) Regulatory Elements for TRBV23-1 Gene

Promoters and enhancers for TRBV23-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I142645 Enhancer 0.6 Ensembl ENCODE 550.8 +0.5 475 1.3 CREB1 RCOR1 TRBV23-1 TRBV28 SSBP1 TRBV24-1 TRB
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TRBV23-1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRBV23-1 Gene

Genomic Locations for TRBV23-1 Gene
chr7:142,645,961-142,646,467
(GRCh38/hg38)
Size:
507 bases
Orientation:
Plus strand
chr7:142,353,468-142,353,971
(GRCh37/hg19)

Genomic View for TRBV23-1 Gene

Genes around TRBV23-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRBV23-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRBV23-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRBV23-1 Gene

Proteins for TRBV23-1 Gene

  • Protein details for TRBV23-1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0A0MS06
    Recommended name:
    T-cell receptor beta variable 23-1 (non-functional)
    Protein Accession:
    A0A0A0MS06

    Protein attributes for TRBV23-1 Gene

    Size:
    115 amino acids
    Molecular mass:
    12785 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TRBV23-1 Gene

Post-translational modifications for TRBV23-1 Gene

No Post-translational modifications

Other Protein References for TRBV23-1 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for TRBV23-1 Gene

Domains & Families for TRBV23-1 Gene

Gene Families for TRBV23-1 Gene

Protein Domains for TRBV23-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRBV23-1: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRBV23-1 Gene

Function for TRBV23-1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRBV23-1 Gene

Localization for TRBV23-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRBV23-1 Gene

Pathways & Interactions for TRBV23-1 Gene

SuperPathways for TRBV23-1 Gene

No Data Available

Interacting Proteins for TRBV23-1 Gene

Gene Ontology (GO) - Biological Process for TRBV23-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRBV23-1 Gene

Drugs & Compounds for TRBV23-1 Gene

No Compound Related Data Available

Transcripts for TRBV23-1 Gene

mRNA/cDNA for TRBV23-1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRBV23-1 Gene

No ASD Table

Relevant External Links for TRBV23-1 Gene

GeneLoc Exon Structure for
TRBV23-1
ECgene alternative splicing isoforms for
TRBV23-1

Expression for TRBV23-1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TRBV23-1 Gene

mRNA differential expression in normal tissues according to GTEx for TRBV23-1 Gene

This gene is overexpressed in Whole Blood (x14.5), Spleen (x9.6), and Small Intestine - Terminal Ileum (x8.1).
genes like me logo Genes that share expression patterns with TRBV23-1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRBV23-1 Gene

Orthologs for TRBV23-1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for TRBV23-1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia -- 34
  • 50 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 34
  • 46 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 37 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 34
  • 35 (a)
OneToMany
Species where no ortholog for TRBV23-1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TRBV23-1 Gene

ENSEMBL:
Gene Tree for TRBV23-1 (if available)
TreeFam:
Gene Tree for TRBV23-1 (if available)

Paralogs for TRBV23-1 Gene

Variants for TRBV23-1 Gene

Additional Variant Information for TRBV23-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRBV23-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRBV23-1 Gene

Disorders for TRBV23-1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for TRBV23-1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
angioimmunoblastic lymphadenopathy with dysproteinemia
  • angioimmunoblastic with dysproteinemia lymphadenopathy
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for TRBV23-1

genes like me logo Genes that share disorders with TRBV23-1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for TRBV23-1 Gene

Publications for TRBV23-1 Gene

  1. The complete 685-kilobase DNA sequence of the human beta T cell receptor locus. (PMID: 8650574) Rowen L … Hood L (Science (New York, N.Y.) 1996) 2 3 58
  2. Analysis of T-cell subpopulations in T-cell non-Hodgkin's lymphoma of angioimmunoblastic lymphadenopathy with dysproteinemia type by single target gene amplification of T cell receptor- beta gene rearrangements. (PMID: 11337383) Willenbrock K … Hansmann ML (The American journal of pathology 2001) 3 58

Products for TRBV23-1 Gene

Sources for TRBV23-1 Gene

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