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Aliases for TRBV21-1 Gene

Aliases for TRBV21-1 Gene

  • T Cell Receptor Beta Variable 21-1 (Pseudogene) 2 3
  • T-Cell Receptor Beta Variable 21-1 (Pseudogene) 5
  • TCRBV10S1P 3
  • TCRBV21S1 3
  • TRBV211 3

External Ids for TRBV21-1 Gene

Previous GeneCards Identifiers for TRBV21-1 Gene

  • GC07U990189
  • GC07P141709
  • GC07P141787
  • GC07P141788
  • GC07P141724
  • GC07P141832
  • GC07P141912
  • GC07P142027
  • GC07P142044
  • GC07P142063
  • GC07P142078
  • GC07P142092
  • GC07P142109
  • GC07P142135
  • GC07Pg41717
  • GC07P142348
  • GC07P142358
  • GC07P142386
  • GC07P142422
  • GC07P142475
  • GC07P142634
  • GC07P142703
  • GC07P142767
  • GC07P142761
  • GC07P142872
  • GC07P143005
  • GC07P143156
  • GC07P143353
  • GC07P143503
  • GC07P143635

Summaries for TRBV21-1 Gene

GeneCards Summary for TRBV21-1 Gene

TRBV21-1 (T Cell Receptor Beta Variable 21-1 (Pseudogene)) is a Pseudogene. Diseases associated with TRBV21-1 include Angioimmunoblastic Lymphadenopathy With Dysproteinemia.

Additional gene information for TRBV21-1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRBV21-1 Gene

Genomics for TRBV21-1 Gene

GeneHancer (GH) Regulatory Elements for TRBV21-1 Gene

Promoters and enhancers for TRBV21-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I142636 Enhancer 0.3 ENCODE 550.8 +0.5 538 2 ZNF146 TRBV21-1 TRBV28 EPHB6 SSBP1 TRBV22-1 TRB
GH07I142632 Enhancer 0.6 ENCODE 0.8 -4.2 -4214 0.2 CTCF ZNF654 RB1 TRIM22 REST RAD21 ZNF610 KLF16 SCRT2 ZNF143 TRBV21-1 TRBV20-1 TRB
GH07I142629 Enhancer 0.3 ENCODE 0.4 -6.9 -6862 0.2 JUND TRBV20-1 TRBV21-1 TRB
GH07I142627 Enhancer 0.3 Ensembl 0.4 -9.8 -9823 0.2 CTCF TRBV20-1 TRBV28 TRBV21-1 TRB
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TRBV21-1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRBV21-1 Gene

Genomic Locations for TRBV21-1 Gene
chr7:142,636,924-142,637,384
(GRCh38/hg38)
Size:
461 bases
Orientation:
Plus strand
chr7:142,344,427-142,344,894
(GRCh37/hg19)

Genomic View for TRBV21-1 Gene

Genes around TRBV21-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRBV21-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRBV21-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRBV21-1 Gene

Proteins for TRBV21-1 Gene

Post-translational modifications for TRBV21-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRBV21-1 Gene

Domains & Families for TRBV21-1 Gene

Gene Families for TRBV21-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRBV21-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRBV21-1 Gene

Function for TRBV21-1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRBV21-1 Gene

Localization for TRBV21-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRBV21-1 Gene

Pathways & Interactions for TRBV21-1 Gene

SuperPathways for TRBV21-1 Gene

No Data Available

Interacting Proteins for TRBV21-1 Gene

Gene Ontology (GO) - Biological Process for TRBV21-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRBV21-1 Gene

Drugs & Compounds for TRBV21-1 Gene

No Compound Related Data Available

Transcripts for TRBV21-1 Gene

mRNA/cDNA for TRBV21-1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRBV21-1 Gene

No ASD Table

Relevant External Links for TRBV21-1 Gene

GeneLoc Exon Structure for
TRBV21-1
ECgene alternative splicing isoforms for
TRBV21-1

Expression for TRBV21-1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TRBV21-1 Gene

mRNA differential expression in normal tissues according to GTEx for TRBV21-1 Gene

This gene is overexpressed in Whole Blood (x27.0), Spleen (x6.1), and Small Intestine - Terminal Ileum (x5.7).
genes like me logo Genes that share expression patterns with TRBV21-1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRBV21-1 Gene

Orthologs for TRBV21-1 Gene

Evolution for TRBV21-1 Gene

ENSEMBL:
Gene Tree for TRBV21-1 (if available)
TreeFam:
Gene Tree for TRBV21-1 (if available)

No data available for Orthologs for TRBV21-1 Gene

Paralogs for TRBV21-1 Gene

No data available for Paralogs for TRBV21-1 Gene

Variants for TRBV21-1 Gene

Additional Variant Information for TRBV21-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRBV21-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRBV21-1 Gene

Disorders for TRBV21-1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for TRBV21-1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
angioimmunoblastic lymphadenopathy with dysproteinemia
  • angioimmunoblastic with dysproteinemia lymphadenopathy
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for TRBV21-1

genes like me logo Genes that share disorders with TRBV21-1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for TRBV21-1 Gene

Publications for TRBV21-1 Gene

  1. The complete 685-kilobase DNA sequence of the human beta T cell receptor locus. (PMID: 8650574) Rowen L … Hood L (Science (New York, N.Y.) 1996) 2 3 58
  2. Comprehensive analysis of the functional TCR repertoire at the single-cell level. (PMID: 18191637) Ozawa T … Muraguchi A (Biochemical and biophysical research communications 2008) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  5. Analysis of T-cell subpopulations in T-cell non-Hodgkin's lymphoma of angioimmunoblastic lymphadenopathy with dysproteinemia type by single target gene amplification of T cell receptor- beta gene rearrangements. (PMID: 11337383) Willenbrock K … Hansmann ML (The American journal of pathology 2001) 3 58

Products for TRBV21-1 Gene

Sources for TRBV21-1 Gene

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