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Aliases for TRBV20-1 Gene

Aliases for TRBV20-1 Gene

  • T Cell Receptor Beta Variable 20-1 2 3
  • T-Cell Receptor Beta Variable 20-1 5
  • V_segment Translation Product 3
  • TCRBV20S1 3
  • TCRBV2S1 3
  • TRBV201 3

External Ids for TRBV20-1 Gene

Previous GeneCards Identifiers for TRBV20-1 Gene

  • GC07U990190
  • GC07P141699
  • GC07P141776
  • GC07P141822
  • GC07P141823
  • GC07P142021
  • GC07P142028
  • GC07P142045
  • GC07P142051
  • GC07P142070
  • GC07P142087
  • GC07P142103
  • GC07P142134
  • GC07P142336
  • GC07P142340
  • GC07P142385
  • GC07P142421
  • GC07P142473
  • GC07P142633
  • GC07P142702
  • GC07P142766
  • GC07P142760
  • GC07P142871
  • GC07P143004
  • GC07P143153
  • GC07P143352
  • GC07P143502
  • GC07P143634

Summaries for TRBV20-1 Gene

GeneCards Summary for TRBV20-1 Gene

TRBV20-1 (T Cell Receptor Beta Variable 20-1) is a Protein Coding gene. An important paralog of this gene is TRBV20OR9-2.

Additional gene information for TRBV20-1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRBV20-1 Gene

Genomics for TRBV20-1 Gene

GeneHancer (GH) Regulatory Elements for TRBV20-1 Gene

Promoters and enhancers for TRBV20-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I142626 Enhancer 0.5 ENCODE 550.8 0.0 -37 0.2 MEIS2 CTCF CTBP1 PKNOX1 RB1 ZNF143 RAD21 TRBV20-1 TRBV19 TRB
GH07I142627 Enhancer 0.3 Ensembl 550.8 +0.5 452 0.2 CTCF TRBV20-1 TRBV28 TRBV21-1 TRB
GH07I142629 Enhancer 0.3 ENCODE 0.8 +3.4 3413 0.2 JUND TRBV20-1 TRBV21-1 TRB
GH07I142632 Enhancer 0.6 ENCODE 0.4 +6.1 6061 0.2 CTCF ZNF654 RB1 TRIM22 REST RAD21 ZNF610 KLF16 SCRT2 ZNF143 TRBV21-1 TRBV20-1 TRB
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TRBV20-1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRBV20-1 Gene

Genomic Locations for TRBV20-1 Gene
chr7:142,626,649-142,627,399
(GRCh38/hg38)
Size:
751 bases
Orientation:
Plus strand
chr7:142,334,163-142,334,913
(GRCh37/hg19)

Genomic View for TRBV20-1 Gene

Genes around TRBV20-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRBV20-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRBV20-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRBV20-1 Gene

Proteins for TRBV20-1 Gene

  • Protein details for TRBV20-1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A075B6N2
    Recommended name:
    T-cell receptor beta variable 20-1
    Protein Accession:
    A0A075B6N2

    Protein attributes for TRBV20-1 Gene

    Size:
    111 amino acids
    Molecular mass:
    12175 Da
    Quaternary structure:
    No Data Available
  • Protein details for TRBV20-1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A5B4
    Recommended name:
    T-cell receptor beta variable 20-1
    Protein Accession:
    A0A5B4

    Protein attributes for TRBV20-1 Gene

    Size:
    111 amino acids
    Molecular mass:
    12205 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for TRBV20-1 Gene

neXtProt entry for TRBV20-1 Gene

Post-translational modifications for TRBV20-1 Gene

No Post-translational modifications

Other Protein References for TRBV20-1 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for TRBV20-1 Gene

Domains & Families for TRBV20-1 Gene

Gene Families for TRBV20-1 Gene

Protein Domains for TRBV20-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRBV20-1: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRBV20-1 Gene

Function for TRBV20-1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRBV20-1 Gene

Localization for TRBV20-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRBV20-1 Gene

Pathways & Interactions for TRBV20-1 Gene

SuperPathways for TRBV20-1 Gene

No Data Available

Interacting Proteins for TRBV20-1 Gene

Gene Ontology (GO) - Biological Process for TRBV20-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRBV20-1 Gene

Drugs & Compounds for TRBV20-1 Gene

No Compound Related Data Available

Transcripts for TRBV20-1 Gene

mRNA/cDNA for TRBV20-1 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRBV20-1 Gene

No ASD Table

Relevant External Links for TRBV20-1 Gene

GeneLoc Exon Structure for
TRBV20-1
ECgene alternative splicing isoforms for
TRBV20-1

Expression for TRBV20-1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TRBV20-1 Gene

mRNA differential expression in normal tissues according to GTEx for TRBV20-1 Gene

This gene is overexpressed in Whole Blood (x30.9) and Spleen (x5.2).
genes like me logo Genes that share expression patterns with TRBV20-1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRBV20-1 Gene

Orthologs for TRBV20-1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for TRBV20-1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia -- 34
  • 70 (a)
ManyToMany
-- 34
  • 68 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia -- 34
  • 59 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 34
  • 57 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 46 (a)
OneToMany
Species where no ortholog for TRBV20-1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TRBV20-1 Gene

ENSEMBL:
Gene Tree for TRBV20-1 (if available)
TreeFam:
Gene Tree for TRBV20-1 (if available)

Paralogs for TRBV20-1 Gene

Paralogs for TRBV20-1 Gene

genes like me logo Genes that share paralogs with TRBV20-1: view

Variants for TRBV20-1 Gene

Additional Variant Information for TRBV20-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRBV20-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRBV20-1 Gene

Disorders for TRBV20-1 Gene

Additional Disease Information for TRBV20-1

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)

No disorders were found for TRBV20-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TRBV20-1 Gene

Publications for TRBV20-1 Gene

  1. TCRBV20S1 and TCRBV3S1 gene segment polymorphisms in systemic sclerosis. (PMID: 18412309) Bredemeier M … Xavier RM (The Journal of rheumatology 2008) 3 44 58
  2. High frequency of the TCRBV20S1 null allele in the Sardinian population. (PMID: 17462510) Bonfigli S … Longinotti M (Human immunology 2007) 3 44 58
  3. The complete 685-kilobase DNA sequence of the human beta T cell receptor locus. (PMID: 8650574) Rowen L … Hood L (Science (New York, N.Y.) 1996) 2 3 58
  4. TCRBV20S1 polymorphism does not influence the susceptibility to type 1 diabetes and multiple sclerosis in the Sardinian population. (PMID: 21927869) Fozza C … Longinotti M (Immunogenetics 2012) 3 58
  5. Sequence and evolution of the human germline V lambda repertoire. (PMID: 8951372) Williams SC … Winter G (Journal of molecular biology 1996) 3 58

Products for TRBV20-1 Gene

Sources for TRBV20-1 Gene

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