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TRAPPC8 (Trafficking Protein Particle Complex Subunit 8) is a Protein Coding gene. Diseases associated with TRAPPC8 include Spondyloepiphyseal Dysplasia Tarda, X-Linked. Among its related pathways are Vesicle-mediated transport and RAB GEFs exchange GTP for GDP on RABs.
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0005515 | protein binding | IEA,IPI | 21453443 |
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0000407 | phagophore assembly site | IBA | 21873635 |
GO:0005794 | Golgi apparatus | IEA | -- |
GO:0005829 | cytosol | TAS | -- |
GO:0030008 | TRAPP complex | IDA | 21525244 |
GO:0031410 | cytoplasmic vesicle | IBA | 21873635 |
SuperPathway | Contained pathways | ||
---|---|---|---|
1 | Vesicle-mediated transport | ||
2 | RAB GEFs exchange GTP for GDP on RABs |
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0006888 | ER to Golgi vesicle-mediated transport | IBA | 21873635 |
GO:0007030 | Golgi organization | IMP | 21525244 |
GO:0016192 | vesicle-mediated transport | IEA | -- |
GO:0030242 | autophagy of peroxisome | IBA | 21873635 |
GO:0034497 | protein localization to phagophore assembly site | IBA | 21873635 |
ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13a | · | 13b | ^ | 14a | · | 14b | ^ | 15 | ^ | 16a | · | 16b | ^ | 17a | · | 17b | ^ | 18 | ^ | 19 | ^ | 20 | ^ | 21 | ^ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SP1: | - | - | - | - | ||||||||||||||||||||||||||||||||||||||||||||||||
SP2: | - | - | ||||||||||||||||||||||||||||||||||||||||||||||||||
SP3: | ||||||||||||||||||||||||||||||||||||||||||||||||||||
SP4: | ||||||||||||||||||||||||||||||||||||||||||||||||||||
SP5: | ||||||||||||||||||||||||||||||||||||||||||||||||||||
SP6: | ||||||||||||||||||||||||||||||||||||||||||||||||||||
SP7: | - | |||||||||||||||||||||||||||||||||||||||||||||||||||
SP8: | ||||||||||||||||||||||||||||||||||||||||||||||||||||
SP9: |
ExUns: | 22 | ^ | 23 | ^ | 24a | · | 24b | ^ | 25 | ^ | 26 | ^ | 27a | · | 27b | ^ | 28 | ^ | 29 | ^ | 30 | ^ | 31 | ^ | 32a | · | 32b | · | 32c | · | 32d |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SP1: | - | - | - | ||||||||||||||||||||||||||||
SP2: | |||||||||||||||||||||||||||||||
SP3: | |||||||||||||||||||||||||||||||
SP4: | |||||||||||||||||||||||||||||||
SP5: | - | ||||||||||||||||||||||||||||||
SP6: | |||||||||||||||||||||||||||||||
SP7: | |||||||||||||||||||||||||||||||
SP8: | |||||||||||||||||||||||||||||||
SP9: |
This gene was present in the common ancestor of eukaryotes.
Organism | Taxonomy | Gene | Similarity | Type | Details |
---|---|---|---|---|---|
Chimpanzee (Pan troglodytes) |
Mammalia | TRAPPC8 30 31 |
|
OneToOne | |
Cow (Bos Taurus) |
Mammalia | -- 31 |
|
OneToMany | |
TRAPPC8 30 |
|
||||
-- 31 |
|
OneToMany | |||
Dog (Canis familiaris) |
Mammalia | TRAPPC8 30 31 |
|
OneToOne | |
Platypus (Ornithorhynchus anatinus) |
Mammalia | -- 31 |
|
OneToMany | |
-- 31 |
|
OneToMany | |||
-- 31 |
|
OneToMany | |||
Oppossum (Monodelphis domestica) |
Mammalia | TRAPPC8 31 |
|
OneToOne | |
Mouse (Mus musculus) |
Mammalia | Trappc8 30 17 31 |
|
OneToOne | |
Rat (Rattus norvegicus) |
Mammalia | Trappc8 30 |
|
||
Chicken (Gallus gallus) |
Aves | TRAPPC8 30 31 |
|
OneToOne | |
Lizard (Anolis carolinensis) |
Reptilia | TRAPPC8 31 |
|
OneToOne | |
Tropical Clawed Frog (Silurana tropicalis) |
Amphibia | trappc8 30 |
|
||
Zebrafish (Danio rerio) |
Actinopterygii | TRAPPC8 31 |
|
OneToOne | |
trappc8 30 |
|
||||
Fruit Fly (Drosophila melanogaster) |
Insecta | l(3)76BDm 30 31 |
|
OneToOne | |
African malaria mosquito (Anopheles gambiae) |
Insecta | AgaP_AGAP006965 30 |
|
||
Worm (Caenorhabditis elegans) |
Secernentea | trpp-8 31 |
|
OneToOne | |
Thale Cress (Arabidopsis thaliana) |
eudicotyledons | AT5G16280 30 |
|
||
Rice (Oryza sativa) |
Liliopsida | Os03g0786900 30 |
|
||
Sea Squirt (Ciona savignyi) |
Ascidiacea | -- 31 |
|
OneToOne |
SNP ID | Clinical significance and condition | Chr 18 pos | Variation | AA Info | Type |
---|---|---|---|---|---|
rs114465558 | Benign: not provided | 31,864,618(-) |
G/A NM_014939.4(TRAPPC8):c.2745+9C>T |
INTRON | |
rs138348106 | Benign: not provided | 31,866,839(-) |
T/C NM_014939.4(TRAPPC8):c.2590+10A>G |
INTRON | |
rs34292533 | Benign: not provided. - | 31,931,460(-) |
T/Cp.Asn74Ser NM_014939.4(TRAPPC8):c.221A>G (p.Asn74Ser) |
MISSENSE | |
rs754569032 | A breast cancer sample |
p.Arg537Gln |
|||
rs16962530 | - |
p.Gln708Glu |
Variant ID | Type | Subtype | PubMed ID |
---|---|---|---|
esv1720728 | CNV | insertion | 17803354 |
esv2855347 | CNV | duplication | 24192839 |
esv3642135 | CNV | gain | 21293372 |
esv3642136 | CNV | gain | 21293372 |
esv3642140 | CNV | gain | 21293372 |
esv3642141 | CNV | loss | 21293372 |
esv3893086 | CNV | gain | 25118596 |
esv990849 | CNV | deletion | 20482838 |
nsv1057229 | CNV | gain | 25217958 |
nsv1067252 | CNV | gain | 25217958 |
nsv1117196 | CNV | tandem duplication | 24896259 |
nsv1138617 | CNV | deletion | 24896259 |
nsv131072 | CNV | deletion | 16902084 |
nsv2247 | CNV | deletion | 18451855 |
nsv820095 | CNV | loss | 19587683 |
Disorder | Aliases | PubMed IDs |
---|---|---|
spondyloepiphyseal dysplasia tarda, x-linked |
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