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Aliases for TRAPPC12-AS1 Gene

Subcategory (RNA class) for TRAPPC12-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TRAPPC12-AS1 Gene

  • TRAPPC12 Antisense RNA 1 2 3 5
  • TRAPPC12 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for TRAPPC12-AS1 Gene

Summaries for TRAPPC12-AS1 Gene

GeneCards Summary for TRAPPC12-AS1 Gene

TRAPPC12-AS1 (TRAPPC12 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TRAPPC12-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRAPPC12-AS1 Gene

Genomics for TRAPPC12-AS1 Gene

GeneHancer (GH) Regulatory Elements for TRAPPC12-AS1 Gene

Promoters and enhancers for TRAPPC12-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I003482 Enhancer 1 FANTOM5 Ensembl ENCODE 581.5 -1.0 -1038 1.1 PKNOX1 USF1 NFIB DDX20 NFYC REST SP1 CTBP1 ZNF316 ZNF143 TRAPPC12-AS1 TRAPPC12 ENSG00000271868
GH02I003480 Enhancer 0.8 ENCODE 606.2 +1.6 1561 1 ELF3 SOX13 TFAP4 SAP130 NFIB ARID4B DMAP1 IRF4 ZNF48 ZSCAN9 TRAPPC12-AS1 ENSG00000235078 ADI1 ENSG00000255767 RPS7 GC02P003451 PIR36101 TRAPPC12
GH02I003464 Enhancer 1.3 Ensembl ENCODE dbSUPER 44.1 +16.5 16485 2.6 FOXA2 MLX ARID4B DMAP1 ETS1 TCF12 ATF7 FOS SP5 NFYC TRAPPC12-AS1 TRAPPC12 PIR36101 GC02P003451
GH02I003469 Enhancer 0.9 Ensembl ENCODE dbSUPER 58.8 +11.7 11671 3 MXI1 POLR2A RXRA NR2F2 TRAPPC12-AS1 TRAPPC12 PIR36101 GC02P003451
GH02I003475 Enhancer 0.7 ENCODE dbSUPER 56.5 +6.1 6058 2.3 SOX5 SOX13 HLF SMAD4 NR2F6 PPARG RXRB TRAPPC12-AS1 ADI1 ENSG00000235078 ENSG00000255767 RPS7 PIR36101 GC02P003451 TRAPPC12
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TRAPPC12-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRAPPC12-AS1 Gene

Genomic Locations for TRAPPC12-AS1 Gene
chr2:3,481,242-3,482,409
(GRCh38/hg38)
Size:
1,168 bases
Orientation:
Minus strand
chr2:3,485,013-3,486,180
(GRCh37/hg19)

Genomic View for TRAPPC12-AS1 Gene

Genes around TRAPPC12-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRAPPC12-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRAPPC12-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for TRAPPC12-AS1 Gene

Proteins for TRAPPC12-AS1 Gene

Post-translational modifications for TRAPPC12-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRAPPC12-AS1 Gene

Domains & Families for TRAPPC12-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRAPPC12-AS1 Gene

Function for TRAPPC12-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRAPPC12-AS1 Gene

Localization for TRAPPC12-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRAPPC12-AS1 Gene

Pathways & Interactions for TRAPPC12-AS1 Gene

SuperPathways for TRAPPC12-AS1 Gene

No Data Available

Interacting Proteins for TRAPPC12-AS1 Gene

Gene Ontology (GO) - Biological Process for TRAPPC12-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRAPPC12-AS1 Gene

Drugs & Compounds for TRAPPC12-AS1 Gene

No Compound Related Data Available

Transcripts for TRAPPC12-AS1 Gene

mRNA/cDNA for TRAPPC12-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRAPPC12-AS1 Gene

No ASD Table

Relevant External Links for TRAPPC12-AS1 Gene

GeneLoc Exon Structure for
TRAPPC12-AS1
ECgene alternative splicing isoforms for
TRAPPC12-AS1

Expression for TRAPPC12-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TRAPPC12-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TRAPPC12-AS1 Gene

This gene is overexpressed in Brain - Cerebellum (x4.9).
genes like me logo Genes that share expression patterns with TRAPPC12-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRAPPC12-AS1 Gene

Orthologs for TRAPPC12-AS1 Gene

Evolution for TRAPPC12-AS1 Gene

ENSEMBL:
Gene Tree for TRAPPC12-AS1 (if available)
TreeFam:
Gene Tree for TRAPPC12-AS1 (if available)

No data available for Orthologs for TRAPPC12-AS1 Gene

Paralogs for TRAPPC12-AS1 Gene

No data available for Paralogs for TRAPPC12-AS1 Gene

Variants for TRAPPC12-AS1 Gene

Additional Variant Information for TRAPPC12-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRAPPC12-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRAPPC12-AS1 Gene

Disorders for TRAPPC12-AS1 Gene

No disorders were found for TRAPPC12-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRAPPC12-AS1 Gene

Publications for TRAPPC12-AS1 Gene

No publications were found for TRAPPC12-AS1 Gene.

Products for TRAPPC12-AS1 Gene

Sources for TRAPPC12-AS1 Gene

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