TRAM2-AS1 Gene (RNA Gene)

TRAM2 Antisense RNA 1 (Head To Head)

GC06P052577
GIFtS:
12
See more...

Aliases for TRAM2-AS1 Gene

Subcategory (RNA class) for TRAM2-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for TRAM2-AS1 Gene

  • TRAM2 Antisense RNA 1 (Head To Head) 2 3 5
  • TRAM2-AS1 2 5 165
  • NONHSAG043933.2 91
  • NONHSAG043934.2 91
  • HSALNG0050617 164
  • Lnc-TMEM14A-2 165

External Ids for TRAM2-AS1 Gene

Previous GeneCards Identifiers for TRAM2-AS1 Gene

  • GC06P052445

Summaries for TRAM2-AS1 Gene

GeneCards Summary for TRAM2-AS1 Gene

TRAM2-AS1 (TRAM2 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for TRAM2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TRAM2-AS1 Gene

Genomics for TRAM2-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for TRAM2-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRAM2-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TRAM2-AS1 Gene

Genomic Locations for TRAM2-AS1 Gene
chr6:52,576,787-52,643,058
(GRCh38/hg38)
Size:
66,272 bases
Orientation:
Plus strand
chr6:52,441,893-52,448,791
(GRCh37/hg19)
Size:
6,899 bases
Orientation:
Plus strand

Genomic View for TRAM2-AS1 Gene

Genes around TRAM2-AS1 on UCSC Golden Path with GeneCards custom track
TRAM2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
TRAM2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRAM2-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for TRAM2-AS1 Gene

Proteins for TRAM2-AS1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for TRAM2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRAM2-AS1 Gene

Domains & Families for TRAM2-AS1 Gene

Gene Families for TRAM2-AS1 Gene

HGNC:
genes like me logo Genes that share domains with TRAM2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRAM2-AS1 Gene

Function for TRAM2-AS1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for TRAM2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRAM2-AS1 Gene

Localization for TRAM2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRAM2-AS1 Gene

Pathways & Interactions for TRAM2-AS1 Gene

PathCards logo

SuperPathways for TRAM2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRAM2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TRAM2-AS1 Gene

Drugs & Compounds for TRAM2-AS1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for TRAM2-AS1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TRAM2-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075D190_9606 lncRNA 2558 2

HGNC: 48663,

RefSeq: NR_103446,

URS0000EF1D55_9606 lncRNA 4275 1

Ensembl: ENST00000653743 (view in UCSC) ,

URS0000EF4AA4_9606 lncRNA 4223 1

Ensembl: ENST00000667402 (view in UCSC) ,

URS0000EEB1F0_9606 lncRNA 4041 1

Ensembl: ENST00000662922 (view in UCSC) ,

URS0000EF2880_9606 lncRNA 3040 1

Ensembl: ENST00000653877 (view in UCSC) ,

TRAM2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for TRAM2-AS1 Gene

5 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for TRAM2-AS1 Gene

No ASD Table

Relevant External Links for TRAM2-AS1 Gene

GeneLoc Exon Structure for
TRAM2-AS1

Expression for TRAM2-AS1 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TRAM2-AS1 Gene

mRNA expression in normal human tissues for TRAM2-AS1 Gene
mRNA expression by GTEx for TRAM2-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for TRAM2-AS1

genes like me logo Genes that share expression patterns with TRAM2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRAM2-AS1 Gene

Orthologs for TRAM2-AS1 Gene

Evolution for TRAM2-AS1 Gene

ENSEMBL:
Gene Tree for TRAM2-AS1 (if available)
TreeFam:
Gene Tree for TRAM2-AS1 (if available)

No data available for Orthologs for TRAM2-AS1 Gene

Paralogs for TRAM2-AS1 Gene

No data available for Paralogs for TRAM2-AS1 Gene

Variants for TRAM2-AS1 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for TRAM2-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for TRAM2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv830663 CNV loss 17160897

Additional Variant Information for TRAM2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRAM2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for TRAM2-AS1 Gene

Disorders for TRAM2-AS1 Gene

Additional Disease Information for TRAM2-AS1

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for TRAM2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TRAM2-AS1 Gene

Publications for TRAM2-AS1 Gene

  1. CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells. (PMID: 27980086) Liu SJ … Lim DA (Science (New York, N.Y.) 2017) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

ExternalLinks

View latest publications for TRAM2-AS1 gene in Mastermind

Products for TRAM2-AS1 Gene

Sources for TRAM2-AS1 Gene