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Aliases for TRAJ53 Gene

Aliases for TRAJ53 Gene

  • T Cell Receptor Alpha Joining 53 2 3
  • T-Cell Receptor Alpha Joining 53 5

External Ids for TRAJ53 Gene

Previous GeneCards Identifiers for TRAJ53 Gene

  • GC14U990338
  • GC14P020944
  • GC14P021008
  • GC14P022023
  • GC14P022983
  • GC14P023080
  • GC14P023141
  • GC14P023251
  • GC14P023314
  • GC14P023356
  • GC14P023427
  • GC14P023485
  • GC14P023572
  • GC14P023716
  • GC14P022488
  • GC14P023961

Summaries for TRAJ53 Gene

Entrez Gene Summary for TRAJ53 Gene

  • T cell receptors recognize foreign antigens which have been processed as small peptides and bound to major histocompatibility complex (MHC) molecules at the surface of antigen presenting cells (APC). Each T cell receptor is a dimer consisting of one alpha and one beta chain or one delta and one gamma chain. In a single cell, the T cell receptor loci are rearranged and expressed in the order delta, gamma, beta, and alpha. If both delta and gamma rearrangements produce functional chains, the cell expresses delta and gamma. If not, the cell proceeds to rearrange the beta and alpha loci. This region represents the germline organization of the T cell receptor alpha and delta loci. Both the alpha and delta loci include V (variable), J (joining), and C (constant) segments and the delta locus also includes diversity (D) segments. The delta locus is situated within the alpha locus, between the alpha V and J segments. During T cell development, the delta chain is synthesized by a recombination event at the DNA level joining a D segment with a J segment; a V segment is then joined to the D-J gene. The alpha chain is synthesized by recombination joining a single V segment with a J segment. For both chains, the C segment is later joined by splicing at the RNA level. Recombination of many different V segments with several J segments provides a wide range of antigen recognition. Additional diversity is attained by junctional diversity, resulting from the random additional of nucleotides by terminal deoxynucleotidyltransferase. Five variable segments can be used in either alpha or delta chains and are described by TRAV/DV symbols. Several V and J segments of the alpha locus are known to be incapable of encoding a protein and are considered pseudogenes. [provided by RefSeq, Aug 2016]

GeneCards Summary for TRAJ53 Gene

TRAJ53 (T Cell Receptor Alpha Joining 53) is a Protein Coding gene.

Additional gene information for TRAJ53 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRAJ53 Gene

Genomics for TRAJ53 Gene

GeneHancer (GH) Regulatory Elements for TRAJ53 Gene

Promoters and enhancers for TRAJ53 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14I022472 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +5.5 5544 32 HDGF PKNOX1 SMAD1 YBX1 IRF4 TCF12 ZNF207 ZNF143 ATF7 RUNX3 GC14P024192 GC14P024203 TRAJ48 TRAJ49 TRAJ50 TRAJ51 PRMT5-AS1 ABHD4 MMP14 MRPL52
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TRAJ53 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRAJ53 Gene

Genomic Locations for TRAJ53 Gene
66 bases
Plus strand

Genomic View for TRAJ53 Gene

Genes around TRAJ53 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRAJ53 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRAJ53 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRAJ53 Gene

Proteins for TRAJ53 Gene

  • Protein details for TRAJ53 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Recommended name:
    T-cell receptor alpha joining 53
    Protein Accession:

    Protein attributes for TRAJ53 Gene

    22 amino acids
    Molecular mass:
    2280 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TRAJ53 Gene

Post-translational modifications for TRAJ53 Gene

No Post-translational modifications

Other Protein References for TRAJ53 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for TRAJ53 Gene

Domains & Families for TRAJ53 Gene

Gene Families for TRAJ53 Gene

Protein Domains for TRAJ53 Gene


Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRAJ53: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRAJ53 Gene

Function for TRAJ53 Gene

Phenotypes From GWAS Catalog for TRAJ53 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRAJ53 Gene

Localization for TRAJ53 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRAJ53 Gene

Pathways & Interactions for TRAJ53 Gene

SuperPathways for TRAJ53 Gene

No Data Available

Interacting Proteins for TRAJ53 Gene

Gene Ontology (GO) - Biological Process for TRAJ53 Gene


No data available for Pathways by source and SIGNOR curated interactions for TRAJ53 Gene

Drugs & Compounds for TRAJ53 Gene

No Compound Related Data Available

Transcripts for TRAJ53 Gene

mRNA/cDNA for TRAJ53 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRAJ53 Gene

No ASD Table

Relevant External Links for TRAJ53 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for TRAJ53 Gene

NURSA nuclear receptor signaling pathways regulating expression of TRAJ53 Gene:

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRAJ53 Gene

Orthologs for TRAJ53 Gene

Evolution for TRAJ53 Gene

Gene Tree for TRAJ53 (if available)
Gene Tree for TRAJ53 (if available)

No data available for Orthologs for TRAJ53 Gene

Paralogs for TRAJ53 Gene

No data available for Paralogs for TRAJ53 Gene

Variants for TRAJ53 Gene

Additional Variant Information for TRAJ53 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRAJ53 Gene

Disorders for TRAJ53 Gene

No disorders were found for TRAJ53 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRAJ53 Gene

Publications for TRAJ53 Gene

  1. The human T-cell receptor TCRAC/TCRDC (C alpha/C delta) region: organization, sequence, and evolution of 97.6 kb of DNA. (PMID: 8188290) Koop BF … Hood L (Genomics 1994) 2 3 58

Products for TRAJ53 Gene

Sources for TRAJ53 Gene

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