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Aliases for TRAF3IP2-AS1 Gene

Subcategory (RNA class) for TRAF3IP2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TRAF3IP2-AS1 Gene

  • TRAF3IP2 Antisense RNA 1 2 3 5
  • TRAF3IP2 Antisense RNA 2 (Non-Protein Coding) 2 3
  • TRAF3IP2 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Chromosome 6 Open Reading Frame 3 2
  • Non-Protein Coding RNA 248 2
  • TRAF3IP2-AS2 3
  • NCRNA00248 3
  • C6orf3 3
  • C6UAS 3

External Ids for TRAF3IP2-AS1 Gene

Previous HGNC Symbols for TRAF3IP2-AS1 Gene

  • TRAF3IP2-AS2
  • C6orf3
  • NCRNA00248

Previous GeneCards Identifiers for TRAF3IP2-AS1 Gene

  • GC06P111807
  • GC06P111808

Summaries for TRAF3IP2-AS1 Gene

GeneCards Summary for TRAF3IP2-AS1 Gene

TRAF3IP2-AS1 (TRAF3IP2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TRAF3IP2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRAF3IP2-AS1 Gene

Genomics for TRAF3IP2-AS1 Gene

GeneHancer (GH) Regulatory Elements for TRAF3IP2-AS1 Gene

Promoters and enhancers for TRAF3IP2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I111477 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 550.8 -1.8 -1815 8.7 ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF263 TRAF3IP2-AS1 REV3L TUBE1 MFSD4B TRAF3IP2 GSTM2P1 ENSG00000255389 ENSG00000220506 BRD7P4 ENSG00000230177
GH06I111563 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 23.1 +82.9 82913 6.3 PKNOX1 SIN3A FEZF1 ZNF2 ZNF213 ZNF416 ZNF143 FOS ZNF662 REST TRAF3IP2 MFSD4B ENSG00000220506 REV3L BRD7P4 FCF1P5 ENSG00000255389 TRAF3IP2-AS1 TUBE1 ENSG00000272356
GH06I110957 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 18.1 -524.7 -524681 2 HDGF SMAD1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 GTF3C6 TRAF3IP2-AS1 METTL24 ENSG00000220506 MFSD4B ENSG00000255389 ENSG00000272356 FCF1P5 RPF2 SLC16A10
GH06I111541 Enhancer 0.9 Ensembl dbSUPER 30.1 +57.7 57729 0.4 PKNOX1 USF1 ZNF529 MZF1 FEZF1 ZIC2 ZNF664 ZNF316 PRDM10 NFE2 TRAF3IP2-AS1 ENSG00000255389 REV3L TRAF3IP2 TUBE1 GC06M111521 GC06M111495
GH06I112041 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 14.4 +560.5 560493 4.4 FOXA2 ZFP64 ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 ZNF766 ZNF207 WISP3 ENSG00000255389 FAM229B TRAF3IP2-AS1 TUBE1 FYN TRAF3IP2 GC06M111982
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TRAF3IP2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRAF3IP2-AS1 Gene

Genomic Locations for TRAF3IP2-AS1 Gene
chr6:111,483,472-111,602,295
(GRCh38/hg38)
Size:
118,824 bases
Orientation:
Plus strand
chr6:111,804,675-111,923,498
(GRCh37/hg19)

Genomic View for TRAF3IP2-AS1 Gene

Genes around TRAF3IP2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRAF3IP2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRAF3IP2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRAF3IP2-AS1 Gene

Proteins for TRAF3IP2-AS1 Gene

Post-translational modifications for TRAF3IP2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRAF3IP2-AS1 Gene

Domains & Families for TRAF3IP2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRAF3IP2-AS1 Gene

Function for TRAF3IP2-AS1 Gene

Phenotypes From GWAS Catalog for TRAF3IP2-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRAF3IP2-AS1 Gene

Localization for TRAF3IP2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRAF3IP2-AS1 Gene

Pathways & Interactions for TRAF3IP2-AS1 Gene

SuperPathways for TRAF3IP2-AS1 Gene

No Data Available

Interacting Proteins for TRAF3IP2-AS1 Gene

Gene Ontology (GO) - Biological Process for TRAF3IP2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRAF3IP2-AS1 Gene

Drugs & Compounds for TRAF3IP2-AS1 Gene

No Compound Related Data Available

Transcripts for TRAF3IP2-AS1 Gene

mRNA/cDNA for TRAF3IP2-AS1 Gene

(8) Additional mRNA sequences :
(12) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TRAF3IP2-AS1 Gene

TRAF3IP2 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRAF3IP2-AS1 Gene

No ASD Table

Relevant External Links for TRAF3IP2-AS1 Gene

GeneLoc Exon Structure for
TRAF3IP2-AS1
ECgene alternative splicing isoforms for
TRAF3IP2-AS1

Expression for TRAF3IP2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TRAF3IP2-AS1 Gene

SOURCE GeneReport for Unigene cluster for TRAF3IP2-AS1 Gene:

Hs.486228
genes like me logo Genes that share expression patterns with TRAF3IP2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRAF3IP2-AS1 Gene

Orthologs for TRAF3IP2-AS1 Gene

Evolution for TRAF3IP2-AS1 Gene

ENSEMBL:
Gene Tree for TRAF3IP2-AS1 (if available)
TreeFam:
Gene Tree for TRAF3IP2-AS1 (if available)

No data available for Orthologs for TRAF3IP2-AS1 Gene

Paralogs for TRAF3IP2-AS1 Gene

No data available for Paralogs for TRAF3IP2-AS1 Gene

Variants for TRAF3IP2-AS1 Gene

Sequence variations from dbSNP and Humsavar for TRAF3IP2-AS1 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs139282334 benign, Candidiasis, familial, 8 111,591,438(+) G/T genic_downstream_transcript_variant, intron_variant
rs186097801 benign, Candidiasis, familial, 8 111,559,489(+) G/A genic_downstream_transcript_variant, intron_variant
rs33980500 risk-factor, benign, Psoriasis susceptibility 13, not specified 111,592,059(+) C/T genic_downstream_transcript_variant, intron_variant
rs371382152 likely-benign, Candidiasis, familial, 8 111,566,543(+) G/A genic_downstream_transcript_variant, intron_variant
rs397518485 pathogenic, Candidiasis, familial, 8 111,559,523(+) G/A genic_downstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for TRAF3IP2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2732577 CNV deletion 23290073
esv2732578 CNV deletion 23290073
nsv950494 CNV duplication 24416366

Additional Variant Information for TRAF3IP2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRAF3IP2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TRAF3IP2-AS1 Gene

Disorders for TRAF3IP2-AS1 Gene

Additional Disease Information for TRAF3IP2-AS1

No disorders were found for TRAF3IP2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TRAF3IP2-AS1 Gene

Publications for TRAF3IP2-AS1 Gene

  1. Genetics of long-term treatment outcome in bipolar disorder. (PMID: 26297903) Fabbri C … Serretti A (Progress in neuro-psychopharmacology & biological psychiatry 2016) 3 58
  2. Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers. (PMID: 26222413) Bannon MJ … Kapatos G (Journal of neurochemistry 2015) 3 58
  3. Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease. (PMID: 23128233) Jostins L … Cho JH (Nature 2012) 3 58
  4. Common variants at TRAF3IP2 are associated with susceptibility to psoriatic arthritis and psoriasis. (PMID: 20953186) Hüffmeier U … Reis A (Nature genetics 2010) 3 58
  5. Genome-wide association study identifies a psoriasis susceptibility locus at TRAF3IP2. (PMID: 20953188) Ellinghaus E … Franke A (Nature genetics 2010) 3 58

Products for TRAF3IP2-AS1 Gene

Sources for TRAF3IP2-AS1 Gene

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