Aliases for TRA-TGC10-1 Gene

Aliases for TRA-TGC10-1 Gene

  • TRNA-Ala (TGC) 10-1 2 3
  • Transfer RNA Alanine 45 (Anticodon UGC) Pseudogene 2 3
  • Transfer RNA-Ala (TGC) 10-1 2 3
  • TRNA-Ala-TGC-10-1 2
  • TRNAA45P 3

External Ids for TRA-TGC10-1 Gene

Previous HGNC Symbols for TRA-TGC10-1 Gene

  • TRNAA45P

Summaries for TRA-TGC10-1 Gene

GeneCards Summary for TRA-TGC10-1 Gene

TRA-TGC10-1 (TRNA-Ala (TGC) 10-1) is a Pseudogene.

Additional gene information for TRA-TGC10-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TRA-TGC10-1 Gene

Genomics for TRA-TGC10-1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TRA-TGC10-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J060995 Enhancer 0.6 ENCODE dbSUPER 250.7 +0.6 557 1.3 FOXA2 TFAP4 NFIA HG983593 TRA-TGC10-1 CD6 LOC105369326 CD5
GH11J060993 Enhancer 0.5 ENCODE dbSUPER 250.7 -1.1 -1116 1.8 SCRT1 PRDM1 HG983593 TRA-TGC10-1 CD6 HSALNG0084489 CD5
GH11J060992 Enhancer 0.7 ENCODE dbSUPER 0.7 -2.7 -2734 0.8 TAL1 MYNN SCRT1 TCF12 RFX1 GLIS1 MEIS2 CBFA2T2 CBFA2T3 CD6 CPSF7 HG983593 TRA-TGC10-1 HSALNG0084489 CD5
GH11J061007 Promoter/Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +11.9 11865 1 GABPB1 BHLHE40 CTCF ZBTB33 IKZF1 NRF1 EGR1 SP1 LARP7 POLR2A LOC105369326 CD6 SLC15A3 TMEM132A HG983593 TRA-TGC10-1 CD5 lnc-VPS37C-3
GH11J061003 Enhancer 0.9 ENCODE CraniofacialAtlas dbSUPER 0.4 +8.5 8503 2 ZIC2 ZNF513 GLIS1 TRIM28 ZBTB8A ZSCAN4 ZXDB ZBTB17 RUNX3 ZBTB20 CD6 SLC15A3 TMEM132A LOC105369326 HG983593 TRA-TGC10-1 CD5 lnc-VPS37C-3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRA-TGC10-1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TRA-TGC10-1 Gene

Latest Assembly
chr11:60,996,036-60,996,105
(GRCh38/hg38)
Size:
70 bases
Orientation:
Plus strand

Previous Assembly
chr11:60,763,508-60,763,577
(GRCh37/hg19 by Entrez Gene)
Size:
70 bases
Orientation:
Plus strand

Genomic View for TRA-TGC10-1 Gene

Genes around TRA-TGC10-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRA-TGC10-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRA-TGC10-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRA-TGC10-1 Gene

Proteins for TRA-TGC10-1 Gene

Post-translational modifications for TRA-TGC10-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRA-TGC10-1 Gene

Domains & Families for TRA-TGC10-1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRA-TGC10-1 Gene

Function for TRA-TGC10-1 Gene

Phenotypes From GWAS Catalog for TRA-TGC10-1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRA-TGC10-1 Gene

Localization for TRA-TGC10-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRA-TGC10-1 Gene

Pathways & Interactions for TRA-TGC10-1 Gene

PathCards logo

SuperPathways for TRA-TGC10-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRA-TGC10-1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TRA-TGC10-1 Gene

Drugs & Compounds for TRA-TGC10-1 Gene

No Compound Related Data Available

Transcripts for TRA-TGC10-1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRA-TGC10-1 Gene

No ASD Table

Relevant External Links for TRA-TGC10-1 Gene

GeneLoc Exon Structure for
TRA-TGC10-1

No data available for mRNA/cDNA for TRA-TGC10-1 Gene

Expression for TRA-TGC10-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRA-TGC10-1 Gene

Orthologs for TRA-TGC10-1 Gene

No data available for Orthologs and Evolution for TRA-TGC10-1 Gene

Paralogs for TRA-TGC10-1 Gene

No data available for Paralogs for TRA-TGC10-1 Gene

Variants for TRA-TGC10-1 Gene

Additional Variant Information for TRA-TGC10-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRA-TGC10-1
Leiden Open Variation Database (LOVD)
TRA-TGC10-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRA-TGC10-1 Gene

Disorders for TRA-TGC10-1 Gene

No disorders were found for TRA-TGC10-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRA-TGC10-1 Gene

Publications for TRA-TGC10-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3

Products for TRA-TGC10-1 Gene

Sources for TRA-TGC10-1 Gene