Aliases for TRA-CGC5-1 Gene

Subcategory (RNA class) for TRA-CGC5-1 Gene

tRNA

Number of RNA Genes sources:

3 / 17

Aliases for TRA-CGC5-1 Gene

  • TRNA-Ala (CGC) 5-1 2 3
  • Transfer RNA Alanine 38 (Anticodon CGC) 2 3
  • Transfer RNA-Ala (CGC) 5-1 2 3
  • TRNA-Ala-CGC-5-1 2 162
  • TRA-CGC5-1 2
  • TRNAA38 3
  • RF00005 168

External Ids for TRA-CGC5-1 Gene

Previous HGNC Symbols for TRA-CGC5-1 Gene

  • TRNAA38

Previous GeneCards Identifiers for TRA-CGC5-1 Gene

  • GC06M028696
  • GC06M028698
  • GC06M028719
  • GC06M028720
  • GC06M028732
  • GC06M029009
  • GC06M028699
  • GC06M028700
  • GC06M028701
  • GC06M028702
  • GC06M028705
  • GC06M028706
  • GC06M028708
  • GC06M028717

Summaries for TRA-CGC5-1 Gene

GeneCards Summary for TRA-CGC5-1 Gene

TRA-CGC5-1 (TRNA-Ala (CGC) 5-1) is an RNA Gene, and is affiliated with the tRNA class.

Rfam classification for TRA-CGC5-1 Gene

Additional gene information for TRA-CGC5-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TRA-CGC5-1 Gene

Genomics for TRA-CGC5-1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TRA-CGC5-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J028697 Enhancer 0.4 Ensembl 600.7 -1.3 -1346 0.5 ZBTB17 SMARCA4 HLF TRA-CGC5-1 lnc-GPX5-3 ZNF603P LINC01556 piR-36252-002 TRA-AGC5-1-001 ZBED9 TRIM27
GH06J028694 Enhancer 0.3 ENCODE 600.7 +1.7 1684 0.2 EZH2 SIN3A RF00005-147 TRK-TTT13-1 TRA-CGC5-1 lnc-GPX5-3 piR-35469 GPX6 ZBED9 TRIM27
GH06J028709 Enhancer 1 ENCODE 0.4 -14.0 -13999 1.5 ZNF221 ARHGAP35 GATAD2A TEAD4 ZNF629 ZNF512 LEF1 IKZF1 ZNF692 DDX20 TRA-AGC5-1-001 piR-36252-002 ZKSCAN4 ZSCAN12 ZKSCAN8 ZKSCAN3 ZSCAN23 ZSCAN9 TRIM27 PGBD1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRA-CGC5-1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TRA-CGC5-1 Gene

Genomic Locations for TRA-CGC5-1 Gene
chr6:28,695,932-28,696,003
(GRCh38/hg38)
Size:
72 bases
Orientation:
Minus strand
chr6:28,663,709-28,663,780
(GRCh37/hg19)
Size:
72 bases
Orientation:
Minus strand

Genomic View for TRA-CGC5-1 Gene

Genes around TRA-CGC5-1 on UCSC Golden Path with GeneCards custom track
TRA-CGC5-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
TRA-CGC5-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRA-CGC5-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRA-CGC5-1 Gene

Proteins for TRA-CGC5-1 Gene

Post-translational modifications for TRA-CGC5-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRA-CGC5-1 Gene

Domains & Families for TRA-CGC5-1 Gene

Gene Families for TRA-CGC5-1 Gene

genes like me logo Genes that share domains with TRA-CGC5-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRA-CGC5-1 Gene

Function for TRA-CGC5-1 Gene

Phenotypes From GWAS Catalog for TRA-CGC5-1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRA-CGC5-1 Gene

Localization for TRA-CGC5-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRA-CGC5-1 Gene

Pathways & Interactions for TRA-CGC5-1 Gene

PathCards logo

SuperPathways for TRA-CGC5-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRA-CGC5-1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TRA-CGC5-1 Gene

Drugs & Compounds for TRA-CGC5-1 Gene

No Compound Related Data Available

Transcripts for TRA-CGC5-1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TRA-CGC5-1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00006D68C3_9606 tRNA 72 4

HGNC: 34963,

GtRNAdb: tRNA-Ala-CGC-5-1:CM000668.1:28663709-28663780, tRNA-Ala-CGC-5-1:CM000668.2:28695932-28696003,

Rfam: RF00005,

ENA: HG983582.1:1..72:tRNA,

URS00006E3AE9_9606 tRNA 72 1

Rfam: RF00005,

TRA-CGC5-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRA-CGC5-1 Gene

No ASD Table

Relevant External Links for TRA-CGC5-1 Gene

GeneLoc Exon Structure for
TRA-CGC5-1

No data available for mRNA/cDNA for TRA-CGC5-1 Gene

Expression for TRA-CGC5-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRA-CGC5-1 Gene

Orthologs for TRA-CGC5-1 Gene

No data available for Orthologs and Evolution for TRA-CGC5-1 Gene

Paralogs for TRA-CGC5-1 Gene

No data available for Paralogs for TRA-CGC5-1 Gene

Variants for TRA-CGC5-1 Gene

Additional Variant Information for TRA-CGC5-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRA-CGC5-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRA-CGC5-1 Gene

Disorders for TRA-CGC5-1 Gene

No disorders were found for TRA-CGC5-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRA-CGC5-1 Gene

Publications for TRA-CGC5-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3

No data available for Mastermind for TRA-CGC5-1 Gene

Products for TRA-CGC5-1 Gene

Sources for TRA-CGC5-1 Gene