Free for academic non-profit institutions. Other users need a Commercial license

TRA-CGC5-1 Gene(RNA Gene)

Transfer RNA-Ala (CGC) 5-1

GCID:
GC06M028708
GIFtS:
6
Genes Participants
UDN Logo

Aliases for TRA-CGC5-1 Gene

Subcategory (RNA class) for TRA-CGC5-1 Gene

tRNA

Quality Score for this RNA gene is

13

Aliases for TRA-CGC5-1 Gene

  • Transfer RNA-Ala (CGC) 5-1 2 3
  • Transfer RNA Alanine 38 (Anticodon CGC) 2 3
  • TRNA-Ala-CGC-5-1 3
  • TRNAA38 3

External Ids for TRA-CGC5-1 Gene

ORGUL Members for TRA-CGC5-1 Gene

Previous HGNC Symbols for TRA-CGC5-1 Gene

  • TRNAA38

Previous GeneCards Identifiers for TRA-CGC5-1 Gene

  • GC06M028696
  • GC06M028698
  • GC06M028699
  • GC06M028700
  • GC06M028701
  • GC06M028702
  • GC06M028705
  • GC06M028706

Summaries for TRA-CGC5-1 Gene

GeneCards Summary for TRA-CGC5-1 Gene

TRA-CGC5-1 (Transfer RNA-Ala (CGC) 5-1) is an RNA Gene, and is affiliated with the tRNA class.

Additional gene information for TRA-CGC5-1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRA-CGC5-1 Gene

Genomics for TRA-CGC5-1 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for TRA-CGC5-1 Gene

Promoters and enhancers for TRA-CGC5-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH06J028694 Enhancer 0.4 ENCODE 650.7 +1.7 1684 0.2 SIN3A EZH2 GC06M028717 TRA-CGC5-1 TRK-TTT13-1 GC06M028697 GPX6 GC06P028492
GH06J028709 Enhancer 1.2 Ensembl ENCODE 0.4 -14.1 -14058 2.1 HDGF PKNOX1 SMAD1 ARNT SIN3A ZNF2 POLR2B ZNF766 ZNF213 E2F8 GC06P028712 TRA-AGC5-1 ZKSCAN4 ZKSCAN8 ZSCAN12 ZKSCAN3 ZSCAN23 ZSCAN9 TRIM27 PGBD1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TRA-CGC5-1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRA-CGC5-1 Gene

Genomic Locations for TRA-CGC5-1 Gene
chr6:28,695,932-28,696,003
(GRCh38/hg38)
Size:
72 bases
Orientation:
Minus strand
chr6:28,663,709-28,663,780
(GRCh37/hg19)
Size:
72 bases
Orientation:
Minus strand

Genomic View for TRA-CGC5-1 Gene

Genes around TRA-CGC5-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRA-CGC5-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRA-CGC5-1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for TRA-CGC5-1 Gene

Proteins for TRA-CGC5-1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for TRA-CGC5-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRA-CGC5-1 Gene

Domains & Families for TRA-CGC5-1 Gene

Gene Families for TRA-CGC5-1 Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRA-CGC5-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRA-CGC5-1 Gene

Function for TRA-CGC5-1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for TRA-CGC5-1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRA-CGC5-1 Gene

Localization for TRA-CGC5-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRA-CGC5-1 Gene

Pathways & Interactions for TRA-CGC5-1 Gene

SuperPathways for TRA-CGC5-1 Gene

PathCards logo More details on SuperPathways for TRA-CGC5-1
No Data Available

Interacting Proteins for TRA-CGC5-1 Gene

Gene Ontology (GO) - Biological Process for TRA-CGC5-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRA-CGC5-1 Gene

Drugs & Compounds for TRA-CGC5-1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for TRA-CGC5-1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for TRA-CGC5-1 Gene

(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRA-CGC5-1 Gene

No ASD Table

Relevant External Links for TRA-CGC5-1 Gene

GeneLoc Exon Structure for
TRA-CGC5-1
ECgene alternative splicing isoforms for
TRA-CGC5-1

Expression for TRA-CGC5-1 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRA-CGC5-1 Gene

Orthologs for TRA-CGC5-1 Gene

No data available for Orthologs and Evolution for TRA-CGC5-1 Gene

Paralogs for TRA-CGC5-1 Gene

No data available for Paralogs for TRA-CGC5-1 Gene

Variants for TRA-CGC5-1 Gene

Additional Variant Information for TRA-CGC5-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRA-CGC5-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRA-CGC5-1 Gene

Disorders for TRA-CGC5-1 Gene

No disorders were found for TRA-CGC5-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRA-CGC5-1 Gene

Publications for TRA-CGC5-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3 58

Products for TRA-CGC5-1 Gene

Sources for TRA-CGC5-1 Gene

Content
Loading form....