Aliases for TRA-AGC5-1 Gene

Subcategory (RNA class) for TRA-AGC5-1 Gene

tRNA

Quality Score for this RNA gene is

13

Aliases for TRA-AGC5-1 Gene

  • TRNA-Ala (Anticodon AGC) 5-1 2 3
  • Transfer RNA Alanine 8 (Anticodon AGC) 2 3
  • Transfer RNA-Ala (AGC) 5-1 2 3
  • TRNA-Ala (AGC) 5-1 3
  • TRNA-Ala-AGC-5-1 167
  • TRNA-Ala-AGC-7-1 167
  • TRA-AGC5-1 2
  • RF00005 174
  • TRNAA8 3

External Ids for TRA-AGC5-1 Gene

Previous HGNC Symbols for TRA-AGC5-1 Gene

  • TRNAA8

Summaries for TRA-AGC5-1 Gene

GeneCards Summary for TRA-AGC5-1 Gene

TRA-AGC5-1 (TRNA-Ala (Anticodon AGC) 5-1) is an RNA Gene, and is affiliated with the tRNA class.

Rfam classification for TRA-AGC5-1 Gene

Additional gene information for TRA-AGC5-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TRA-AGC5-1 Gene

Genomics for TRA-AGC5-1 Gene

GeneHancer (GH) Regulatory Elements for TRA-AGC5-1 Gene

Promoters and enhancers for TRA-AGC5-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J028709 Enhancer 1 ENCODE 750.6 -0.6 -587 1.5 GTF3C2 ZNF24 ZBTB40 SMARCE1 MCM5 ZNF362 CC2D1A ELF1 RBM39 L3MBTL2 TRA-AGC5-1 piR-36252-002 ZKSCAN8 ZKSCAN4 ZSCAN12 ZKSCAN3 ZSCAN9 SUMO2P1 ZSCAN23 TRIM27
GH06J028712 Enhancer 0.8 Ensembl ENCODE 750.6 +1.6 1611 0.8 ZNF362 ZEB2 ZBTB17 ZNF580 DPF2 CEBPG CEBPB KDM1A ADNP ZNF2 TRA-AGC5-1 piR-36252-002 TRIM27 ZNF602P ZNF603P ZKSCAN8 RN7SL471P TRA-AGC7-1 piR-36252-003
GH06J028711 Enhancer 0.5 ENCODE 750.6 +1.0 1014 0 CSDE1 PKNOX1 ZEB2 GATAD2B DPF2 KDM1A ADNP ZNF2 CHAMP1 TRA-AGC5-1 piR-36252-002 TRA-AGC7-1 piR-36252-003
GH06J028697 Enhancer 0.3 Ensembl 0.4 -13.2 -13240 0.5 HLF ZBTB17 TRA-CGC5-1 lnc-GPX5-3 ZNF603P LINC01556 TRA-AGC5-1 piR-36252-002
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRA-AGC5-1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRA-AGC5-1 Gene

Genomic Locations for TRA-AGC5-1 Gene
chr6:28,710,589-28,710,660
(GRCh38/hg38)
Size:
72 bases
Orientation:
Plus strand
chr6:28,678,366-28,678,437
(GRCh37/hg19)
Size:
72 bases
Orientation:
Plus strand

Genomic View for TRA-AGC5-1 Gene

Genes around TRA-AGC5-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRA-AGC5-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRA-AGC5-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for TRA-AGC5-1 Gene

Proteins for TRA-AGC5-1 Gene

Post-translational modifications for TRA-AGC5-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRA-AGC5-1 Gene

Domains & Families for TRA-AGC5-1 Gene

Gene Families for TRA-AGC5-1 Gene

genes like me logo Genes that share domains with TRA-AGC5-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRA-AGC5-1 Gene

Function for TRA-AGC5-1 Gene

Phenotypes From GWAS Catalog for TRA-AGC5-1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRA-AGC5-1 Gene

Localization for TRA-AGC5-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRA-AGC5-1 Gene

Pathways & Interactions for TRA-AGC5-1 Gene

PathCards logo

SuperPathways for TRA-AGC5-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRA-AGC5-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRA-AGC5-1 Gene

Drugs & Compounds for TRA-AGC5-1 Gene

No Compound Related Data Available

Transcripts for TRA-AGC5-1 Gene

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRA-AGC5-1 Gene

No ASD Table

Relevant External Links for TRA-AGC5-1 Gene

GeneLoc Exon Structure for
TRA-AGC5-1
ECgene alternative splicing isoforms for
TRA-AGC5-1

Expression for TRA-AGC5-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRA-AGC5-1 Gene

Orthologs for TRA-AGC5-1 Gene

No data available for Orthologs and Evolution for TRA-AGC5-1 Gene

Paralogs for TRA-AGC5-1 Gene

No data available for Paralogs for TRA-AGC5-1 Gene

Variants for TRA-AGC5-1 Gene

Additional Variant Information for TRA-AGC5-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRA-AGC5-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRA-AGC5-1 Gene

Disorders for TRA-AGC5-1 Gene

No disorders were found for TRA-AGC5-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRA-AGC5-1 Gene

Publications for TRA-AGC5-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3 56

Products for TRA-AGC5-1 Gene

Sources for TRA-AGC5-1 Gene