TRA-AGC3-1 Gene (RNA Gene)

TRNA-Ala (Anticodon AGC) 3-1

GC06P028607
GIFtS:
6
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Aliases for TRA-AGC3-1 Gene

Subcategory (RNA class) for TRA-AGC3-1 Gene

tRNA

Number of RNA Genes sources:

3 / 17

Aliases for TRA-AGC3-1 Gene

  • TRNA-Ala (Anticodon AGC) 3-1 2 3
  • Transfer RNA Alanine 28 (Anticodon AGC) 2 3
  • Transfer RNA-Ala (AGC) 3-1 2 3
  • TRNA-Ala-AGC-3-1 2 162
  • TRNA-Ala (AGC) 3-1 3
  • TRNA-Ala-AGC-7-1 162
  • TRA-AGC3-1 2
  • TRA-AGC7-1 2
  • TRNAA28 3
  • RF00005 168

External Ids for TRA-AGC3-1 Gene

Previous HGNC Symbols for TRA-AGC3-1 Gene

  • TRNAA28

Summaries for TRA-AGC3-1 Gene

GeneCards Summary for TRA-AGC3-1 Gene

TRA-AGC3-1 (TRNA-Ala (Anticodon AGC) 3-1) is an RNA Gene, and is affiliated with the tRNA class.

Rfam classification for TRA-AGC3-1 Gene

Additional gene information for TRA-AGC3-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TRA-AGC3-1 Gene

Genomics for TRA-AGC3-1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for TRA-AGC3-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH06J028606 Promoter/Enhancer 1.5 ENCODE CraniofacialAtlas 600.7 -0.3 -335 1.2 GATAD2A CTCF TEAD4 PRDM10 ZNF629 NFKBIZ TARDBP ZNF143 PRDM1 ZIC2 TRA-AGC3-1 piR-36252-001 ZKSCAN8 ZSCAN12 ZKSCAN3 ZSCAN9 ZKSCAN4 ZSCAN23 TRIM27 ZNF165
GH06J028607 Enhancer 0.7 ENCODE 600.7 +0.9 872 0.7 IKZF1 MTA1 DPF2 HDAC1 SOX6 HES1 FOXK2 HDAC2 MEF2D AFF1 TRA-AGC3-1 piR-36252-001 ZNF603P GPX6 ZBED9 lnc-ZBED9-2 lnc-GPX5-2
GH06J028596 Promoter/Enhancer 1.3 Ensembl ENCODE 0.4 -9.1 -9114 2.3 ZNF221 CREB1 GATAD2A PRDM10 ZNF629 TFE3 ZNF692 ZNF174 ZSCAN4 PATZ1 TRS-GCT4-1 lnc-GPX6-3 piR-34439-006 ZSCAN23 ZSCAN26 ZSCAN12 ZNF603P ZKSCAN8 PGBD1 ZSCAN9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRA-AGC3-1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TRA-AGC3-1 Gene

Genomic Locations for TRA-AGC3-1 Gene
chr6:28,607,156-28,607,227
(GRCh38/hg38)
Size:
72 bases
Orientation:
Plus strand
chr6:28,574,933-28,575,004
(GRCh37/hg19)
Size:
72 bases
Orientation:
Plus strand

Genomic View for TRA-AGC3-1 Gene

Genes around TRA-AGC3-1 on UCSC Golden Path with GeneCards custom track
TRA-AGC3-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
TRA-AGC3-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRA-AGC3-1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for TRA-AGC3-1 Gene

Proteins for TRA-AGC3-1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for TRA-AGC3-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRA-AGC3-1 Gene

Domains & Families for TRA-AGC3-1 Gene

Gene Families for TRA-AGC3-1 Gene

HGNC:
genes like me logo Genes that share domains with TRA-AGC3-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRA-AGC3-1 Gene

Function for TRA-AGC3-1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRA-AGC3-1 Gene

Localization for TRA-AGC3-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRA-AGC3-1 Gene

Pathways & Interactions for TRA-AGC3-1 Gene

PathCards logo

SuperPathways for TRA-AGC3-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRA-AGC3-1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TRA-AGC3-1 Gene

Drugs & Compounds for TRA-AGC3-1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for TRA-AGC3-1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TRA-AGC3-1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000047C79B_9606 tRNA 72 4

HGNC: 34865,

GtRNAdb: tRNA-Ala-AGC-3-1:CM000668.1:28574933-28575004, tRNA-Ala-AGC-3-1:CM000668.2:28607156-28607227,

Rfam: RF00005,

ENA: HG983551.1:1..72:tRNA,

URS00006D3DD2_9606 tRNA 72 3

HGNC: 34653,

GtRNAdb: tRNA-Ala-AGC-7-1:CM000668.1:28687481-28687552,

ENA: HG983555.1:1..72:tRNA,

TRA-AGC3-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRA-AGC3-1 Gene

No ASD Table

Relevant External Links for TRA-AGC3-1 Gene

GeneLoc Exon Structure for
TRA-AGC3-1

No data available for mRNA/cDNA for TRA-AGC3-1 Gene

Expression for TRA-AGC3-1 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRA-AGC3-1 Gene

Orthologs for TRA-AGC3-1 Gene

No data available for Orthologs and Evolution for TRA-AGC3-1 Gene

Paralogs for TRA-AGC3-1 Gene

No data available for Paralogs for TRA-AGC3-1 Gene

Variants for TRA-AGC3-1 Gene

Additional Variant Information for TRA-AGC3-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRA-AGC3-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRA-AGC3-1 Gene

Disorders for TRA-AGC3-1 Gene

No disorders were found for TRA-AGC3-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRA-AGC3-1 Gene

Publications for TRA-AGC3-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3

ExternalLinks

View latest publications for TRA-AGC3-1 gene in Mastermind

Products for TRA-AGC3-1 Gene

Sources for TRA-AGC3-1 Gene