TRA-AGC3-1 Gene (RNA Gene)

TRNA-Ala (Anticodon AGC) 3-1

GC06P028607
GIFtS:
5

Aliases for TRA-AGC3-1 Gene

Subcategory (RNA class) for TRA-AGC3-1 Gene

tRNA

Quality Score for this RNA gene is

13

Aliases for TRA-AGC3-1 Gene

  • TRNA-Ala (Anticodon AGC) 3-1 2 3
  • Transfer RNA Alanine 28 (Anticodon AGC) 2 3
  • Transfer RNA-Ala (AGC) 3-1 2 3
  • TRNA-Ala (AGC) 3-1 3
  • TRNA-Ala-AGC-3-1 167
  • TRNA-Ala-AGC-7-1 167
  • TRA-AGC3-1 2
  • TRNAA28 3
  • RF00005 174

External Ids for TRA-AGC3-1 Gene

Previous HGNC Symbols for TRA-AGC3-1 Gene

  • TRNAA28

Summaries for TRA-AGC3-1 Gene

GeneCards Summary for TRA-AGC3-1 Gene

TRA-AGC3-1 (TRNA-Ala (Anticodon AGC) 3-1) is an RNA Gene, and is affiliated with the tRNA class.

Rfam classification for TRA-AGC3-1 Gene

Additional gene information for TRA-AGC3-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TRA-AGC3-1 Gene

Genomics for TRA-AGC3-1 Gene

GeneHancer (GH) Regulatory Elements for TRA-AGC3-1 Gene

Promoters and enhancers for TRA-AGC3-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH06J028606 Promoter/Enhancer 1.5 ENCODE CraniofacialAtlas 750.6 -0.3 -335 1.2 E2F8 GTF3C2 ZNF24 CTCF LCORL RBPJ NR2F6 ATF1 ZNF217 CREB1 TRA-AGC3-1 piR-36252-001 ZKSCAN8 ZKSCAN3 ZKSCAN4 ZSCAN9 ZSCAN12 GPX6 ZNF603P ZBED9
GH06J028607 Enhancer 0.7 ENCODE 750.6 +0.9 872 0.7 SMARCE1 CC2D1A SMARCA4 MTA1 GMEB1 IKZF1 DPF2 ATF1 HDAC1 SOX6 TRA-AGC3-1 piR-36252-001 ZNF603P GPX6 ZBED9 lnc-GPX5-2 lnc-ZBED9-2
GH06J028596 Promoter/Enhancer 1.3 Ensembl ENCODE 0.4 -9.1 -9114 2.3 ZNF785 SIN3A ZNF24 ZBTB6 CREB1 ZNF362 HLF MAX ZNF652 ZNF280D TRS-GCT4-1 lnc-GPX6-3 piR-34439-006 ZSCAN26 ZNF603P PGBD1 ZSCAN23 ZSCAN12 ZKSCAN8 ZSCAN9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRA-AGC3-1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRA-AGC3-1 Gene

Genomic Locations for TRA-AGC3-1 Gene
chr6:28,607,156-28,607,227
(GRCh38/hg38)
Size:
72 bases
Orientation:
Plus strand
chr6:28,574,933-28,575,004
(GRCh37/hg19)
Size:
72 bases
Orientation:
Plus strand

Genomic View for TRA-AGC3-1 Gene

Genes around TRA-AGC3-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRA-AGC3-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRA-AGC3-1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for TRA-AGC3-1 Gene

Proteins for TRA-AGC3-1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for TRA-AGC3-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRA-AGC3-1 Gene

Domains & Families for TRA-AGC3-1 Gene

Gene Families for TRA-AGC3-1 Gene

HGNC:
genes like me logo Genes that share domains with TRA-AGC3-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRA-AGC3-1 Gene

Function for TRA-AGC3-1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRA-AGC3-1 Gene

Localization for TRA-AGC3-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRA-AGC3-1 Gene

Pathways & Interactions for TRA-AGC3-1 Gene

PathCards logo

SuperPathways for TRA-AGC3-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRA-AGC3-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRA-AGC3-1 Gene

Drugs & Compounds for TRA-AGC3-1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for TRA-AGC3-1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for TRA-AGC3-1 Gene

(2) RNACentral transcripts :
(2) ENA transcripts :
(3) GtRNAdb transcripts :
(1) Rfam transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRA-AGC3-1 Gene

No ASD Table

Relevant External Links for TRA-AGC3-1 Gene

GeneLoc Exon Structure for
TRA-AGC3-1
ECgene alternative splicing isoforms for
TRA-AGC3-1

Expression for TRA-AGC3-1 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRA-AGC3-1 Gene

Orthologs for TRA-AGC3-1 Gene

No data available for Orthologs and Evolution for TRA-AGC3-1 Gene

Paralogs for TRA-AGC3-1 Gene

No data available for Paralogs for TRA-AGC3-1 Gene

Variants for TRA-AGC3-1 Gene

Additional Variant Information for TRA-AGC3-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRA-AGC3-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRA-AGC3-1 Gene

Disorders for TRA-AGC3-1 Gene

No disorders were found for TRA-AGC3-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRA-AGC3-1 Gene

Publications for TRA-AGC3-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3 56

ExternalLinks

View latest publications for TRA-AGC3-1 gene in Mastermind

Products for TRA-AGC3-1 Gene

Sources for TRA-AGC3-1 Gene