TRA-AGC23-1 Gene (Pseudogene)

TRNA-Ala (Anticodon AGC) 23-1

GC06M028778
GIFtS:
4
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Aliases for TRA-AGC23-1 Gene

Aliases for TRA-AGC23-1 Gene

  • TRNA-Ala (Anticodon AGC) 23-1 2 3
  • Transfer RNA Alanine 44 (Anticodon AGC) Pseudogene 2 3
  • Transfer RNA-Ala (AGC) 23-1 2 3
  • TRNA-Ala-AGC-23-1 2 3
  • TRNAA44P 3

External Ids for TRA-AGC23-1 Gene

Previous HGNC Symbols for TRA-AGC23-1 Gene

  • TRNAA44P

Summaries for TRA-AGC23-1 Gene

GeneCards Summary for TRA-AGC23-1 Gene

TRA-AGC23-1 (TRNA-Ala (Anticodon AGC) 23-1) is a Pseudogene.

Additional gene information for TRA-AGC23-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TRA-AGC23-1 Gene

Genomics for TRA-AGC23-1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for TRA-AGC23-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH06J028777 Enhancer 1 ENCODE dbSUPER 250.7 +1.6 1559 0.2 ZIC2 VEZF1 KLF7 SKIL FOSL1 ZNF2 EHMT2 NRF1 DIDO1 EP400 HG983577 HSALNG0048998 RF02002-039 TRA-AGC23-1 TRIM27 PGBD1 ENSG00000261839 ZNF192P1 ZSCAN26 HSALNG0049002
GH06J028775 Enhancer 1.1 ENCODE dbSUPER 0.7 +2.3 2308 1.3 FEZF1 IKZF1 ETS1 HES1 ZIC2 VEZF1 MAFF ELF1 KLF7 GABPA HSALNG0048998 RF02002-039 TRIM27 ZNF603P HG983577 HSALNG0049002 TRA-AGC23-1 HSALNG0048999 ZBED9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TRA-AGC23-1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TRA-AGC23-1 Gene

Latest Assembly
chr6:28,778,767-28,778,838
(GRCh38/hg38)
Size:
72 bases
Orientation:
Minus strand

Previous Assembly
chr6:28,746,544-28,746,615
(GRCh37/hg19 by Entrez Gene)
Size:
72 bases
Orientation:
Minus strand

Genomic View for TRA-AGC23-1 Gene

Genes around TRA-AGC23-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRA-AGC23-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRA-AGC23-1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

Proteins for TRA-AGC23-1 Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for TRA-AGC23-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRA-AGC23-1 Gene

Domains & Families for TRA-AGC23-1 Gene

Gene Families for TRA-AGC23-1 Gene

HGNC:
genes like me logo Genes that share domains with TRA-AGC23-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TRA-AGC23-1 Gene

Function for TRA-AGC23-1 Gene

Products:

  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRA-AGC23-1 Gene

Localization for TRA-AGC23-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRA-AGC23-1 Gene

Pathways & Interactions for TRA-AGC23-1 Gene

PathCards logo

SuperPathways for TRA-AGC23-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRA-AGC23-1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TRA-AGC23-1 Gene

Drugs & Compounds for TRA-AGC23-1 Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for TRA-AGC23-1 Gene

Products:

  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Alternative Splicing Database (ASD) splice patterns (SP) for TRA-AGC23-1 Gene

No ASD Table

Relevant External Links for TRA-AGC23-1 Gene

GeneLoc Exon Structure for
TRA-AGC23-1

No data available for mRNA/cDNA for TRA-AGC23-1 Gene

Expression for TRA-AGC23-1 Gene

Products:

  1. Primer products for research
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRA-AGC23-1 Gene

Orthologs for TRA-AGC23-1 Gene

No data available for Orthologs and Evolution for TRA-AGC23-1 Gene

Paralogs for TRA-AGC23-1 Gene

No data available for Paralogs for TRA-AGC23-1 Gene

Variants for TRA-AGC23-1 Gene

Additional Variant Information for TRA-AGC23-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRA-AGC23-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRA-AGC23-1 Gene

Disorders for TRA-AGC23-1 Gene

No disorders were found for TRA-AGC23-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRA-AGC23-1 Gene

Publications for TRA-AGC23-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3

ExternalLinks

View latest publications for TRA-AGC23-1 gene in Mastermind

Products for TRA-AGC23-1 Gene

Sources for TRA-AGC23-1 Gene