Aliases for TPTEP2 Gene

Aliases for TPTEP2 Gene

  • TPTE Pseudogene 2 2 3 5
  • Z98749.2 2 3
  • Transmembrane Phosphoinositide 3-Phosphatase And Tensin Homolog 2 Pseudogene 3
  • TPTE And PTEN Homologous Inositol Lipid Phosphatase Pseudogene 3
  • Hypothetical Protein LOC400927 3
  • TPTEP2 5

External Ids for TPTEP2 Gene

Previous GeneCards Identifiers for TPTEP2 Gene

  • GC22M043826
  • GC22M044204
  • GC22M044538
  • GC22M045382
  • GC22M042343
  • GC22M043453

Summaries for TPTEP2 Gene

GeneCards Summary for TPTEP2 Gene

TPTEP2 (TPTE Pseudogene 2) is a Pseudogene.

Additional gene information for TPTEP2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TPTEP2 Gene

Genomics for TPTEP2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TPTEP2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J038567 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 10.9 -170.5 -170459 4.7 ZNF629 PRDM10 ZNF692 PRDM1 ZSCAN4 ZNF24 PATZ1 POLR2A BRD9 ZNF501 DMC1 LOC105373031 lnc-FAM227A-2 FAM227A DDX17 ENSG00000230149 ENSG00000230912 ENSG00000273076 SNORD83B ENSG00000272669
GH22J037683 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 10.8 +713.1 713063 3.9 SP1 HNRNPL CREB1 GATAD2A PRDM10 ZNF629 TFE3 SIX5 IKZF1 ZNF692 ENSG00000100101 NOL12 ENSG00000230912 TRIOBP ANKRD54 CSNK1E ENSG00000228274 DDX17 FAM227A EIF3L
GH22J038390 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 10 +2.9 2928 10.8 PRDM10 ZNF629 ZNF692 BACH1 PRDM1 ZNF143 ZIC2 POLR2A PATZ1 NR2C1 piR-32559-269 CSNK1E KCNJ4 KDELR3 TPTEP2 NPTXR ENSG00000228274 TPTEP2-CSNK1E lnc-CSNK1E-1 ENSG00000229955
GH22J039308 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.8 -911.4 -911404 4.3 HNRNPL GATAD2A CTCF ZBTB33 PRDM10 ZNF629 LEF1 NFKBIZ ZNF692 POLR2A DDX17 RPL3 SYNGR1 APOBEC3A ENSG00000230149 SNORD83B ENSG00000273076 ENSG00000272669 ENSG00000225450 TAB1
GH22J037931 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 10.8 +465.6 465590 3.3 SP1 HNRNPL GATAD2A CTCF PRDM10 ZNF629 TFE3 IKZF1 NFKBIZ ZNF692 GALR3 EIF3L DDX17 ENSG00000230149 ENSG00000273076 ENSG00000272669 TRIOBP ENSG00000225450 RNU6-900P MICALL1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TPTEP2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TPTEP2 Gene

Genomic Locations for TPTEP2 Gene
chr22:38,335,762-38,398,929
(GRCh38/hg38)
Size:
63,168 bases
Orientation:
Minus strand
chr22:38,731,767-38,794,934
(GRCh37/hg19)
Size:
63,168 bases
Orientation:
Minus strand

Genomic View for TPTEP2 Gene

Genes around TPTEP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TPTEP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TPTEP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TPTEP2 Gene

Proteins for TPTEP2 Gene

Post-translational modifications for TPTEP2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TPTEP2 Gene

Domains & Families for TPTEP2 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TPTEP2 Gene

Function for TPTEP2 Gene

Phenotypes From GWAS Catalog for TPTEP2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TPTEP2 Gene

Localization for TPTEP2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TPTEP2 Gene

Pathways & Interactions for TPTEP2 Gene

PathCards logo

SuperPathways for TPTEP2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TPTEP2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TPTEP2 Gene

Drugs & Compounds for TPTEP2 Gene

No Compound Related Data Available

Transcripts for TPTEP2 Gene

mRNA/cDNA for TPTEP2 Gene

4 NCBI additional mRNA sequence :
10 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TPTEP2 Gene

No ASD Table

Relevant External Links for TPTEP2 Gene

GeneLoc Exon Structure for
TPTEP2

Expression for TPTEP2 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for TPTEP2

No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TPTEP2 Gene

Orthologs for TPTEP2 Gene

Evolution for TPTEP2 Gene

ENSEMBL:
Gene Tree for TPTEP2 (if available)
TreeFam:
Gene Tree for TPTEP2 (if available)

No data available for Orthologs for TPTEP2 Gene

Paralogs for TPTEP2 Gene

No data available for Paralogs for TPTEP2 Gene

Variants for TPTEP2 Gene

Structural Variations from Database of Genomic Variants (DGV) for TPTEP2 Gene

Variant ID Type Subtype PubMed ID
esv29271 CNV loss 19812545
nsv1072210 CNV deletion 25765185
nsv1072638 CNV deletion 25765185
nsv1126631 CNV deletion 24896259
nsv1143410 CNV deletion 24896259
nsv834195 CNV loss 17160897
nsv964629 CNV duplication 23825009
nsv979674 CNV duplication 23825009

Additional Variant Information for TPTEP2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TPTEP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for TPTEP2 Gene

Disorders for TPTEP2 Gene

Additional Disease Information for TPTEP2

No disorders were found for TPTEP2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TPTEP2 Gene

Publications for TPTEP2 Gene

  1. Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing. (PMID: 28611215) Fei T … Brown M (Proceedings of the National Academy of Sciences of the United States of America 2017) 3
  2. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3

Products for TPTEP2 Gene

Sources for TPTEP2 Gene