Aliases for TPT1-AS1 Gene

Subcategory (RNA class) for TPT1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for TPT1-AS1 Gene

  • TPT1 Antisense RNA 1 2 3 5
  • TPT1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • TPT1-AS1 2 168
  • HSALNG0096821 167
  • NONHSAG013413 92

External Ids for TPT1-AS1 Gene

Previous GeneCards Identifiers for TPT1-AS1 Gene

  • GC13P045917
  • GC13P045926

Summaries for TPT1-AS1 Gene

GeneCards Summary for TPT1-AS1 Gene

TPT1-AS1 (TPT1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with TPT1-AS1 include Malignant Glioma.

Additional gene information for TPT1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TPT1-AS1 Gene

Genomics for TPT1-AS1 Gene

GeneHancer (GH) Regulatory Elements for TPT1-AS1 Gene

Promoters and enhancers for TPT1-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TPT1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TPT1-AS1 Gene

Genomic Locations for TPT1-AS1 Gene
chr13:45,341,344-45,417,975
(GRCh38/hg38)
Size:
76,632 bases
Orientation:
Plus strand
chr13:45,915,480-45,965,872
(GRCh37/hg19)
Size:
50,393 bases
Orientation:
Plus strand

Genomic View for TPT1-AS1 Gene

Genes around TPT1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TPT1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TPT1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TPT1-AS1 Gene

Proteins for TPT1-AS1 Gene

Post-translational modifications for TPT1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TPT1-AS1 Gene

Domains & Families for TPT1-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TPT1-AS1 Gene

Function for TPT1-AS1 Gene

Phenotypes From GWAS Catalog for TPT1-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TPT1-AS1 Gene

Localization for TPT1-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TPT1-AS1 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TPT1-AS1 Gene

Pathways & Interactions for TPT1-AS1 Gene

PathCards logo

SuperPathways for TPT1-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for TPT1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TPT1-AS1 Gene

Drugs & Compounds for TPT1-AS1 Gene

No Compound Related Data Available

Transcripts for TPT1-AS1 Gene

mRNA/cDNA for TPT1-AS1 Gene

111 RNACentral transcripts :
1 REFSEQ mRNAs :
5 NCBI additional mRNA sequence :
50 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
37 NONCODE transcripts :
50 LncBook transcripts :
74 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TPT1-AS1 Gene

No ASD Table

Relevant External Links for TPT1-AS1 Gene

GeneLoc Exon Structure for
TPT1-AS1

Expression for TPT1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TPT1-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for TPT1-AS1

SOURCE GeneReport for Unigene cluster for TPT1-AS1 Gene:

Hs.375766
genes like me logo Genes that share expression patterns with TPT1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TPT1-AS1 Gene

Orthologs for TPT1-AS1 Gene

Evolution for TPT1-AS1 Gene

ENSEMBL:
Gene Tree for TPT1-AS1 (if available)
TreeFam:
Gene Tree for TPT1-AS1 (if available)

No data available for Orthologs for TPT1-AS1 Gene

Paralogs for TPT1-AS1 Gene

No data available for Paralogs for TPT1-AS1 Gene

Variants for TPT1-AS1 Gene

Additional dbSNP identifiers (rs#s) for TPT1-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for TPT1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv222e201 CNV deletion 23290073
dgv223e201 CNV deletion 23290073
esv1002945 CNV deletion 20482838
esv2200003 CNV deletion 18987734
esv2662251 CNV deletion 23128226
esv2662623 CNV deletion 23128226
esv2677094 CNV deletion 23128226
esv2747345 CNV deletion 23290073
esv2747346 CNV deletion 23290073
esv29553 CNV gain 19812545
esv3334636 CNV duplication 20981092
esv3400068 CNV duplication 20981092
esv3403190 CNV duplication 20981092
esv3550405 CNV deletion 23714750
esv3550406 CNV deletion 23714750
esv3580625 CNV loss 25503493
esv3631951 CNV loss 21293372
esv3631952 CNV loss 21293372
esv3631953 CNV loss 21293372
esv3631954 CNV gain 21293372
esv3631955 CNV loss 21293372
esv3631956 CNV loss 21293372
nsv1023 CNV insertion 18451855
nsv1046200 CNV gain 25217958
nsv1071098 CNV deletion 25765185
nsv1143589 CNV deletion 24896259
nsv510579 CNV deletion 20534489
nsv951079 CNV deletion 24416366
nsv977234 CNV duplication 23825009
nsv977235 CNV duplication 23825009

Additional Variant Information for TPT1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TPT1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for TPT1-AS1 Gene

Disorders for TPT1-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for TPT1-AS1 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
malignant glioma
  • glial cell tumor
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for TPT1-AS1

genes like me logo Genes that share disorders with TPT1-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for TPT1-AS1 Gene

Publications for TPT1-AS1 Gene

  1. LncRNA profile study reveals four-lncRNA signature associated with the prognosis of patients with anaplastic gliomas. (PMID: 27764782) Wang W … Zhao J (Oncotarget 2016) 2 3 54
  2. LncRNA TPT1-AS1 promotes tumorigenesis and metastasis in epithelial ovarian cancer by inducing TPT1 expression. (PMID: 30941821) Wu W … Guo X (Cancer science 2019) 3 54
  3. Long non-coding RNA TPT1-AS1 promotes cell growth and metastasis in cervical cancer via acting AS a sponge for miR-324-5p. (PMID: 30045766) Jiang H … Jiang X (Journal of experimental & clinical cancer research : CR 2018) 3 54
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

Products for TPT1-AS1 Gene

Sources for TPT1-AS1 Gene