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Aliases for TPRX2P Gene

Aliases for TPRX2P Gene

  • Tetrapeptide Repeat Homeobox 2, Pseudogene 2 3 5
  • Tetra-Peptide Repeat Homeobox 1 Pseudogene 3
  • Tetra-Peptide Repeat Homeobox 2 Pseudogene 3
  • Tetra-Peptide Repeat Homeobox Pseudogene 1 3
  • TPRX2P1 3
  • TPRXP1 3

External Ids for TPRX2P Gene

Previous GeneCards Identifiers for TPRX2P Gene

  • GC19U900565
  • GC19P053055
  • GC19P048363
  • GC19P048357
  • GC19P048360

Summaries for TPRX2P Gene

Entrez Gene Summary for TPRX2P Gene

  • Homeobox genes encode DNA-binding proteins, many of which are thought to be involved in early embryonic development. Homeobox genes encode a DNA-binding domain of 60 to 63 amino acids referred to as the homeodomain. This pseudogene is a member of the TPRX homeobox gene family. [provided by RefSeq, Jul 2008]

GeneCards Summary for TPRX2P Gene

TPRX2P (Tetrapeptide Repeat Homeobox 2, Pseudogene) is a Pseudogene.

Additional gene information for TPRX2P Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TPRX2P Gene

Genomics for TPRX2P Gene

GeneHancer (GH) Regulatory Elements for TPRX2P Gene

Promoters and enhancers for TPRX2P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J047858 Enhancer 0.8 ENCODE 650.7 -1.6 -1574 0.2 PKNOX1 KLF17 RARA ZEB1 GTF3C2 TCF12 GLIS2 ZNF366 ATF7 FOS TPRX2P ZC3H4 GRWD1 BICRA NOP53-AS1 KDELR1 CCDC9 CYTH2 NOP53 RPL18
GH19J047105 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 14.6 -749.8 -749816 9.2 CLOCK MLX FEZF1 DMAP1 YBX1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZC3H4 ENSG00000268810 BICRA CCDC9 C5AR2 NOP53-AS1 PRKD2 NOP53 SNORD23 ENSG00000268746
GH19J047607 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 14.6 -249.0 -249044 6.9 PKNOX1 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 POLR2B ZNF207 ZNF143 SELENOW ENSG00000269321 ZC3H4 ZNF541 BICRA BSPH1 TPRX2P ELSPBP1 LOC105372430 MEIS3
GH19J047225 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 14.6 -630.7 -630732 8.2 MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF416 ZNF143 BBC3 BICRA ENSG00000268810 NOP53-AS1 CCDC9 NOP53 ENSG00000269321 SNORD23 PPP5D1 INAFM1
GH19J047242 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 14.6 -616.3 -616322 2.5 CLOCK ZFP64 DMAP1 YBX1 YY1 ZNF213 E2F8 ZNF143 ZNF548 MCM3 BBC3 ZC3H4 BICRA ENSG00000268810 NOP53-AS1 CCDC9 NOP53 ENSG00000269321 SLC1A5 SNORD23
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TPRX2P on UCSC Golden Path with GeneCards custom track

Genomic Locations for TPRX2P Gene

Genomic Locations for TPRX2P Gene
chr19:47,860,113-47,862,000
(GRCh38/hg38)
Size:
1,888 bases
Orientation:
Plus strand
chr19:48,337,701-48,365,257
(GRCh37/hg19)
Size:
27,557 bases
Orientation:
Plus strand

Genomic View for TPRX2P Gene

Genes around TPRX2P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TPRX2P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TPRX2P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TPRX2P Gene

Proteins for TPRX2P Gene

Post-translational modifications for TPRX2P Gene

No Post-translational modifications

No data available for DME Specific Peptides for TPRX2P Gene

Domains & Families for TPRX2P Gene

Gene Families for TPRX2P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TPRX2P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TPRX2P Gene

Function for TPRX2P Gene

Phenotypes From GWAS Catalog for TPRX2P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TPRX2P Gene

Localization for TPRX2P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TPRX2P Gene

Pathways & Interactions for TPRX2P Gene

SuperPathways for TPRX2P Gene

No Data Available

Interacting Proteins for TPRX2P Gene

Gene Ontology (GO) - Biological Process for TPRX2P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TPRX2P Gene

Drugs & Compounds for TPRX2P Gene

No Compound Related Data Available

Transcripts for TPRX2P Gene

mRNA/cDNA for TPRX2P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TPRX2P Gene

No ASD Table

Relevant External Links for TPRX2P Gene

GeneLoc Exon Structure for
TPRX2P
ECgene alternative splicing isoforms for
TPRX2P

Expression for TPRX2P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TPRX2P Gene

NURSA nuclear receptor signaling pathways regulating expression of TPRX2P Gene:

TPRX2P
genes like me logo Genes that share expression patterns with TPRX2P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TPRX2P Gene

Orthologs for TPRX2P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for TPRX2P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TPRX2P 34
  • 98 (a)
OneToOne
Species where no ortholog for TPRX2P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TPRX2P Gene

ENSEMBL:
Gene Tree for TPRX2P (if available)
TreeFam:
Gene Tree for TPRX2P (if available)

Paralogs for TPRX2P Gene

(8) SIMAP similar genes for TPRX2P Gene using alignment to 1 proteins:

  • F5GXB4_HUMAN
genes like me logo Genes that share paralogs with TPRX2P: view

No data available for Paralogs for TPRX2P Gene

Variants for TPRX2P Gene

Variation tolerance for TPRX2P Gene

Gene Damage Index Score: 5.48; 71.68% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for TPRX2P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TPRX2P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for TPRX2P Gene

Disorders for TPRX2P Gene

No disorders were found for TPRX2P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TPRX2P Gene

Publications for TPRX2P Gene

No publications were found for TPRX2P Gene.

Products for TPRX2P Gene

Sources for TPRX2P Gene

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