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Aliases for TPRG1-AS2 Gene

Subcategory (RNA class) for TPRG1-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TPRG1-AS2 Gene

  • TPRG1 Antisense RNA 2 2 3 5
  • TPRG1 Antisense RNA 2 (Non-Protein Coding) 2

External Ids for TPRG1-AS2 Gene

Previous GeneCards Identifiers for TPRG1-AS2 Gene

  • GC00U933006
  • GC03M188957

Summaries for TPRG1-AS2 Gene

GeneCards Summary for TPRG1-AS2 Gene

TPRG1-AS2 (TPRG1 Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TPRG1-AS2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TPRG1-AS2 Gene

Genomics for TPRG1-AS2 Gene

GeneHancer (GH) Regulatory Elements for TPRG1-AS2 Gene

Promoters and enhancers for TPRG1-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I189275 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 10.7 -36.5 -36470 2.3 JUN MAX MZF1 EBF1 BATF POLR2A SMARCC2 FOS RUNX3 CEBPB TPRG1-AS2 TP63 LOC105374270 TPRG1
GH03I189267 Enhancer 1.2 Ensembl ENCODE dbSUPER 10.9 -28.6 -28574 3.4 PKNOX1 NFIB BMI1 BRCA1 RAD21 RFX5 RCOR1 FOS RUNX3 DEK TPRG1-AS2 LOC105374270 TPRG1
GH03I189292 Enhancer 0.9 ENCODE dbSUPER 10.1 -52.9 -52886 1.5 ELK4 SMARCC1 RFX1 MAX CEBPB ELF1 EP300 RFX5 E2F1 ZNF335 TPRG1-AS2 LOC105374270 TPRG1
GH03I189193 Promoter 0.7 EPDnew 10.9 +46.6 46588 0.1 ATF7 ATF2 TPRG1 TPRG1-AS2 LOC647299
GH03I189288 Enhancer 0.7 FANTOM5 10.5 -48.2 -48189 0.2 PKNOX1 BMI1 BATF IRF4 RELA NFATC1 ETV6 IKZF2 RUNX3 ZBED1 TPRG1-AS2 LOC105374270 TPRG1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TPRG1-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TPRG1-AS2 Gene

Genomic Locations for TPRG1-AS2 Gene
chr3:189,238,686-189,240,594
(GRCh38/hg38)
Size:
1,909 bases
Orientation:
Minus strand
chr3:188,956,475-188,958,383
(GRCh37/hg19)

Genomic View for TPRG1-AS2 Gene

Genes around TPRG1-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TPRG1-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TPRG1-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TPRG1-AS2 Gene

Proteins for TPRG1-AS2 Gene

Post-translational modifications for TPRG1-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TPRG1-AS2 Gene

Domains & Families for TPRG1-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TPRG1-AS2 Gene

Function for TPRG1-AS2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TPRG1-AS2 Gene

Localization for TPRG1-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TPRG1-AS2 Gene

Pathways & Interactions for TPRG1-AS2 Gene

SuperPathways for TPRG1-AS2 Gene

No Data Available

Interacting Proteins for TPRG1-AS2 Gene

Gene Ontology (GO) - Biological Process for TPRG1-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TPRG1-AS2 Gene

Drugs & Compounds for TPRG1-AS2 Gene

No Compound Related Data Available

Transcripts for TPRG1-AS2 Gene

mRNA/cDNA for TPRG1-AS2 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TPRG1-AS2 Gene

TPRG1 antisense RNA 2:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TPRG1-AS2 Gene

No ASD Table

Relevant External Links for TPRG1-AS2 Gene

GeneLoc Exon Structure for
TPRG1-AS2
ECgene alternative splicing isoforms for
TPRG1-AS2

Expression for TPRG1-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TPRG1-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for TPRG1-AS2 Gene

This gene is overexpressed in Esophagus - Mucosa (x15.5), Vagina (x9.1), Cervix - Ectocervix (x6.2), Skin - Not Sun Exposed (Suprapubic) (x5.3), and Skin - Sun Exposed (Lower leg) (x5.0).

SOURCE GeneReport for Unigene cluster for TPRG1-AS2 Gene:

Hs.616080
genes like me logo Genes that share expression patterns with TPRG1-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TPRG1-AS2 Gene

Orthologs for TPRG1-AS2 Gene

Evolution for TPRG1-AS2 Gene

ENSEMBL:
Gene Tree for TPRG1-AS2 (if available)
TreeFam:
Gene Tree for TPRG1-AS2 (if available)

No data available for Orthologs for TPRG1-AS2 Gene

Paralogs for TPRG1-AS2 Gene

No data available for Paralogs for TPRG1-AS2 Gene

Variants for TPRG1-AS2 Gene

Sequence variations from dbSNP and Humsavar for TPRG1-AS2 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1001816334 -- 189,241,120(-) G/C upstream_transcript_variant
rs1002079177 -- 189,241,831(-) G/A upstream_transcript_variant
rs1004089684 -- 189,239,549(-) T/C intron_variant
rs1004153518 -- 189,240,099(-) G/A intron_variant
rs1005090814 -- 189,242,155(-) G/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for TPRG1-AS2 Gene

Variant ID Type Subtype PubMed ID
nsv829819 CNV gain 17160897

Additional Variant Information for TPRG1-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TPRG1-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TPRG1-AS2 Gene

Disorders for TPRG1-AS2 Gene

Additional Disease Information for TPRG1-AS2

No disorders were found for TPRG1-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TPRG1-AS2 Gene

Publications for TPRG1-AS2 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 58

Products for TPRG1-AS2 Gene

Sources for TPRG1-AS2 Gene

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