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Aliases for TPRG1-AS1 Gene

Subcategory (RNA class) for TPRG1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TPRG1-AS1 Gene

  • TPRG1 Antisense RNA 1 2 3 5
  • TPRG1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for TPRG1-AS1 Gene

Previous GeneCards Identifiers for TPRG1-AS1 Gene

  • GC00U933570
  • GC03M188660

Summaries for TPRG1-AS1 Gene

GeneCards Summary for TPRG1-AS1 Gene

TPRG1-AS1 (TPRG1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TPRG1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TPRG1-AS1 Gene

Genomics for TPRG1-AS1 Gene

GeneHancer (GH) Regulatory Elements for TPRG1-AS1 Gene

Promoters and enhancers for TPRG1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I188946 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE dbSUPER 555.1 -1.4 -1423 6.1 FOXA2 SIN3A ZNF2 YY1 ZNF121 GLIS2 FOS KLF13 SP3 RXRA TPRG1-AS1 TPRG1 GC03P188961
GH03I188945 Enhancer 0.6 FANTOM5 dbSUPER 550.8 +1.9 1931 0.4 ZMYM3 TPRG1 TPRG1-AS1 GC03P188886
GH03I188914 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 11.1 +32.9 32938 1.4 FOXA2 RXRA MAX BATF RAD21 NR2F2 JUND ATF3 HNF4G HNF4A TPRG1 TPRG1-AS1 GC03P188886
GH03I188899 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 11.6 +46.6 46642 3.2 JUND JUN FOXP2 EP300 MAFK TCF7L2 TPRG1-AS1 TPRG1 GC03P188886
GH03I188916 Enhancer 0.8 Ensembl ENCODE 11.1 +30.1 30050 1.6 HLF JUNB MAX CEBPB BATF YY1 NFIL3 MAFF CEBPA ZBTB33 TPRG1 TPRG1-AS1 GC03P188886
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TPRG1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TPRG1-AS1 Gene

Genomic Locations for TPRG1-AS1 Gene
chr3:188,941,715-188,947,639
(GRCh38/hg38)
Size:
5,925 bases
Orientation:
Minus strand
chr3:188,659,504-188,665,428
(GRCh37/hg19)

Genomic View for TPRG1-AS1 Gene

Genes around TPRG1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TPRG1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TPRG1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TPRG1-AS1 Gene

Proteins for TPRG1-AS1 Gene

Post-translational modifications for TPRG1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TPRG1-AS1 Gene

Domains & Families for TPRG1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TPRG1-AS1 Gene

Function for TPRG1-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TPRG1-AS1 Gene

Localization for TPRG1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TPRG1-AS1 Gene

Pathways & Interactions for TPRG1-AS1 Gene

SuperPathways for TPRG1-AS1 Gene

No Data Available

Interacting Proteins for TPRG1-AS1 Gene

Gene Ontology (GO) - Biological Process for TPRG1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TPRG1-AS1 Gene

Drugs & Compounds for TPRG1-AS1 Gene

No Compound Related Data Available

Transcripts for TPRG1-AS1 Gene

mRNA/cDNA for TPRG1-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TPRG1-AS1 Gene

No ASD Table

Relevant External Links for TPRG1-AS1 Gene

GeneLoc Exon Structure for
TPRG1-AS1
ECgene alternative splicing isoforms for
TPRG1-AS1

Expression for TPRG1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TPRG1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TPRG1-AS1 Gene

This gene is overexpressed in Liver (x15.1), Adipose - Visceral (Omentum) (x4.5), and Adrenal Gland (x4.0).
genes like me logo Genes that share expression patterns with TPRG1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TPRG1-AS1 Gene

Orthologs for TPRG1-AS1 Gene

Evolution for TPRG1-AS1 Gene

ENSEMBL:
Gene Tree for TPRG1-AS1 (if available)
TreeFam:
Gene Tree for TPRG1-AS1 (if available)

No data available for Orthologs for TPRG1-AS1 Gene

Paralogs for TPRG1-AS1 Gene

No data available for Paralogs for TPRG1-AS1 Gene

Variants for TPRG1-AS1 Gene

Sequence variations from dbSNP and Humsavar for TPRG1-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1001156095 -- 188,945,343(-) T/G intron_variant
rs1001420764 -- 188,945,100(-) G/A intron_variant
rs1001578169 -- 188,947,380(-) G/A non_coding_transcript_variant
rs1001595698 -- 188,944,676(-) T/C intron_variant
rs1001914943 -- 188,945,923(-) G/C intron_variant

Additional Variant Information for TPRG1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TPRG1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TPRG1-AS1 Gene

Disorders for TPRG1-AS1 Gene

Additional Disease Information for TPRG1-AS1

No disorders were found for TPRG1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TPRG1-AS1 Gene

Publications for TPRG1-AS1 Gene

No publications were found for TPRG1-AS1 Gene.

Products for TPRG1-AS1 Gene

Sources for TPRG1-AS1 Gene

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