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Aliases for TPM4P1 Gene

Subcategory (RNA class) for TPM4P1 Gene

lncRNA

Aliases for TPM4P1 Gene

  • Tropomyosin 4 Pseudogene 1 2 3 5
  • Tropomyosin 2 (Beta) Pseudogene 3

External Ids for TPM4P1 Gene

ORGUL Members for TPM4P1 Gene

Previous GeneCards Identifiers for TPM4P1 Gene

  • GC10M101875

Summaries for TPM4P1 Gene

GeneCards Summary for TPM4P1 Gene

TPM4P1 (Tropomyosin 4 Pseudogene 1) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for TPM4P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TPM4P1 Gene

Genomics for TPM4P1 Gene

GeneHancer (GH) Regulatory Elements for TPM4P1 Gene

Promoters and enhancers for TPM4P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J100115 Promoter 0.8 Ensembl 600.7 +0.0 22 0.4 ZNF140 ZXDB ZNF213 ZNF202 ZNF558 TPM4P1 EBAG9P1 MRPL43 CWF19L1 PHBP9 TWNK ENSG00000236308 SLC25A28 DNMBP CYP2C23P
GH10J100128 Enhancer 0.7 Ensembl 7.6 -15.6 -15578 4.4 CBFA2T2 ZNF121 ZNF548 IKZF1 PRDM12 MGA ZNF623 ZBTB11 ZNF202 TCF12 CWF19L1 PHBP9 EBAG9P1 DNMBP MRPL43 CHUK ENSG00000272572 TWNK DNMBP-AS1 SLC25A28
GH10J100100 Enhancer 1.2 Ensembl ENCODE 0.4 +11.6 11622 6.4 ZNF473 ELF3 CTCF MNT CEBPG RERE ZNF24 TFE3 SP1 HNF1A CWF19L1 SLC25A28 ENSG00000236308 HIF1AN PKD2L1 TPM4P1 CPN1 CYP2C23P
GH10J100112 Enhancer 0.4 Ensembl 0.7 +3.1 3123 0.2 ZNF24 STAT1 RAD21 CPN1 TPM4P1 CYP2C23P
GH10J100109 Enhancer 0.6 Ensembl 0.4 +5.5 5522 0.2 ELF3 ZSCAN21 PRDM10 DRAP1 ZNF335 ZBTB33 ZSCAN16 SP3 SP1 CPN1 TPM4P1 CYP2C23P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TPM4P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TPM4P1 Gene

Genomic Locations for TPM4P1 Gene
chr10:100,114,417-100,115,223
(GRCh38/hg38)
Size:
807 bases
Orientation:
Minus strand
chr10:101,874,174-101,874,980
(GRCh37/hg19)
Size:
807 bases
Orientation:
Minus strand

Genomic View for TPM4P1 Gene

Genes around TPM4P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TPM4P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TPM4P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TPM4P1 Gene

Proteins for TPM4P1 Gene

Post-translational modifications for TPM4P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TPM4P1 Gene

Domains & Families for TPM4P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TPM4P1 Gene

Function for TPM4P1 Gene

Phenotypes From GWAS Catalog for TPM4P1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TPM4P1 Gene

Localization for TPM4P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TPM4P1 Gene

Pathways & Interactions for TPM4P1 Gene

PathCards logo

SuperPathways for TPM4P1 Gene

No Data Available

Interacting Proteins for TPM4P1 Gene

Gene Ontology (GO) - Biological Process for TPM4P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TPM4P1 Gene

Drugs & Compounds for TPM4P1 Gene

No Compound Related Data Available

Transcripts for TPM4P1 Gene

mRNA/cDNA for TPM4P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TPM4P1 Gene

No ASD Table

Relevant External Links for TPM4P1 Gene

GeneLoc Exon Structure for
TPM4P1
ECgene alternative splicing isoforms for
TPM4P1

Expression for TPM4P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TPM4P1 Gene

mRNA differential expression in normal tissues according to GTEx for TPM4P1 Gene

This gene is overexpressed in Testis (x53.0).

NURSA nuclear receptor signaling pathways regulating expression of TPM4P1 Gene:

TPM4P1
genes like me logo Genes that share expression patterns with TPM4P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TPM4P1 Gene

Orthologs for TPM4P1 Gene

Evolution for TPM4P1 Gene

ENSEMBL:
Gene Tree for TPM4P1 (if available)
TreeFam:
Gene Tree for TPM4P1 (if available)

No data available for Orthologs for TPM4P1 Gene

Paralogs for TPM4P1 Gene

No data available for Paralogs for TPM4P1 Gene

Variants for TPM4P1 Gene

Additional Variant Information for TPM4P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TPM4P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TPM4P1 Gene

Disorders for TPM4P1 Gene

No disorders were found for TPM4P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TPM4P1 Gene

Publications for TPM4P1 Gene

No publications were found for TPM4P1 Gene.

Products for TPM4P1 Gene

Sources for TPM4P1 Gene

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