Aliases for TPM3P9 Gene

Aliases for TPM3P9 Gene

  • Tropomyosin 3 Pseudogene 9 2 3 5
  • TPM3P9 5

External Ids for TPM3P9 Gene

Previous GeneCards Identifiers for TPM3P9 Gene

  • GC19P053937

Summaries for TPM3P9 Gene

GeneCards Summary for TPM3P9 Gene

TPM3P9 (Tropomyosin 3 Pseudogene 9) is a Pseudogene.

Additional gene information for TPM3P9 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TPM3P9 Gene

Genomics for TPM3P9 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TPM3P9 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TPM3P9 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TPM3P9 Gene

Genomic Locations for TPM3P9 Gene
chr19:53,431,974-53,444,672
(GRCh38/hg38)
Size:
12,699 bases
Orientation:
Plus strand
chr19:53,935,227-53,947,925
(GRCh37/hg19)
Size:
12,699 bases
Orientation:
Plus strand

Genomic View for TPM3P9 Gene

Genes around TPM3P9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TPM3P9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TPM3P9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TPM3P9 Gene

Proteins for TPM3P9 Gene

Post-translational modifications for TPM3P9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TPM3P9 Gene

Domains & Families for TPM3P9 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TPM3P9 Gene

Function for TPM3P9 Gene

Phenotypes From GWAS Catalog for TPM3P9 Gene

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for TPM3P9

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TPM3P9 Gene

Localization for TPM3P9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TPM3P9 Gene

Pathways & Interactions for TPM3P9 Gene

PathCards logo

SuperPathways for TPM3P9 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TPM3P9 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TPM3P9 Gene

Drugs & Compounds for TPM3P9 Gene

No Compound Related Data Available

Transcripts for TPM3P9 Gene

mRNA/cDNA for TPM3P9 Gene

1 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for TPM3P9

Alternative Splicing Database (ASD) splice patterns (SP) for TPM3P9 Gene

No ASD Table

Relevant External Links for TPM3P9 Gene

GeneLoc Exon Structure for
TPM3P9

Expression for TPM3P9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TPM3P9 Gene

mRNA differential expression in normal tissues according to GTEx for TPM3P9 Gene

This gene is overexpressed in Prostate (x4.2).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for TPM3P9

genes like me logo Genes that share expression patterns with TPM3P9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TPM3P9 Gene

Orthologs for TPM3P9 Gene

Evolution for TPM3P9 Gene

ENSEMBL:
Gene Tree for TPM3P9 (if available)
TreeFam:
Gene Tree for TPM3P9 (if available)

No data available for Orthologs for TPM3P9 Gene

Paralogs for TPM3P9 Gene

No data available for Paralogs for TPM3P9 Gene

Variants for TPM3P9 Gene

Structural Variations from Database of Genomic Variants (DGV) for TPM3P9 Gene

Variant ID Type Subtype PubMed ID
dgv1071e212 CNV gain 25503493
dgv3646n100 CNV loss 25217958
dgv3647n100 CNV loss 25217958
dgv3648n100 CNV gain 25217958
dgv3649n100 CNV loss 25217958
dgv3650n100 CNV gain+loss 25217958
dgv3651n100 CNV gain 25217958
dgv3652n100 CNV gain 25217958
dgv431n27 CNV gain 19166990
dgv530e201 CNV deletion 23290073
dgv6535n54 CNV gain 21841781
dgv6536n54 CNV gain 21841781
dgv6537n54 CNV gain 21841781
dgv6538n54 CNV loss 21841781
dgv6539n54 CNV loss 21841781
dgv661e199 CNV deletion 23128226
dgv88e19 CNV loss 19470904
esv2491793 CNV deletion 19546169
esv2718812 CNV deletion 23290073
esv2718823 CNV deletion 23290073
esv2758770 CNV loss 17122850
esv2762954 CNV gain+loss 21179565
esv3310473 CNV novel sequence insertion 20981092
esv3403561 CNV insertion 20981092
esv3556588 CNV deletion 23714750
esv3583517 CNV loss 25503493
esv3644756 CNV gain 21293372
esv3644757 CNV loss 21293372
esv3644758 CNV gain 21293372
esv3893241 CNV gain+loss 25118596
esv3893242 CNV loss 25118596
esv3893243 CNV gain 25118596
esv8848 CNV loss 19470904
nsv1055773 CNV gain 25217958
nsv1059834 CNV gain 25217958
nsv1160662 CNV deletion 26073780
nsv458767 CNV loss 19166990
nsv458768 CNV loss 19166990
nsv470154 CNV loss 18288195
nsv470156 CNV gain 18288195
nsv515728 CNV gain+loss 19592680
nsv521988 CNV loss 19592680
nsv580082 CNV loss 21841781
nsv580086 CNV loss 21841781
nsv580097 CNV gain+loss 21841781
nsv580101 CNV gain 21841781
nsv956579 CNV deletion 24416366
nsv963077 CNV duplication 23825009

Additional Variant Information for TPM3P9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TPM3P9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for TPM3P9 Gene

Disorders for TPM3P9 Gene

Additional Disease Information for TPM3P9

No disorders were found for TPM3P9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TPM3P9 Gene

Publications for TPM3P9 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for TPM3P9 Gene

Sources for TPM3P9 Gene